DreINT0057176 @ danRer10
Intron Retention
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:591380-595816:-
Coord C1 exon
chr9:595646-595816
Coord A exon
chr9:591442-595645
Coord C2 exon
chr9:591380-591441
Length
4204 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCTGCTGTTGTGTGTTTCAGGGC
3' ss Score
10.86
Exon sequences
Seq C1 exon
CTACGTAACGTGAACCTGTCGTGTGTGAGGACCTGTATGGTGGTGGCGGAGGAGCGTCCTCGTATCACACTCACTCAGAGTTTCTCCAAGATCTTCAAGGATCTGGGTTTGTCCACTCGCGCCGTCAGCACCACCTTCGGCTGCAGGGTCAACGTGGCCGTCTGTCTACAG
Seq A exon
GTGAGGCCAACCCAGACAGGTGTAGTCAGAATTATCAGCCAATTTATTTTTTCCCCCAATTTCTGTTTAACGGAGAGCAGATTTCTTCAACACATTTATAATCATAACAGTGTTAATAACTCATCTCTAATAACTGATTTGTTTCCTCTTCTCCATGATGACAGTAAATAACATCAGACATAGATAATATTAGACTTTATTTTCCTCCCTGTAAATAAAGAAAGGGAAATAAATACAATAGAATAAAAATATGAAACAAACTGTGCTTTAAGCATCTTTACTGTCAGAAATAAACTTCAGCTACAAAAGTCCTCCAGTCGAGAACAGTGAGGGATTTTCTCCTTTTGTTGTTTGATTAATAATAAAAAGCAGCAGAAATATTGCGCACTGTGTCTTTAAGAATAGTGCCGCTCTGATATGGTTTCTCTTTCACATGTCTTTTAATTCTCAACTTGTTAATTACTTGTTAAATACACAAATGAGGGTTGATATGAATAATCTCTGAACACAGCGCTCTGACACAAATCTGCATGTGTTTGAGCATTAAAGCGCTCACATTAAGATGCCGTTAGATGTGTGTGTGCTCTGCTCGTCTCCGAGGCCAAGTGCGCGCACACACAGATGCATGCCATGCGGTCTCGGTCGCACTATTAAAAATATGAATGATTGGAACGTACATTGATGAATGAAGCACATCCCGTGCTGCAGACGTTACATTACAGCACATGCTTTCAGTCATTTTCATGTGAGACTGAGCTTTGTAGAGCAACAAATGTCTACACCTGTCACTTTTATAACAGAATTTTATTTTATTTTTTCCCTGAGGGGTGATTTTGAATTGACGAATGGGGCCGGATCAAATGATCTTGCTGGCTGCATACAGCCTGGAGGCCGGACGTTCCCCACCCATGGGCTAGATATTCTTCAAGACACTTCTGTACAGTTAAAAGTGACATGTAAAGGCTTCACTAGGGTAATTAGGGTAACAAGGCAGGTTAGGGTAATTAGGCAATTTATTGCATAACGATAGTTTGTTGCAACCCAAGCTCATTCTAGAAACGTAGCCCCGCGGACGTTTCTGGAGGCGGCGATTTACGTGCCCGAAGGTTTGTACGGCCGCATTTAGTTTTTCTCGAGCAAACGCTGCGGGGCGGTGTGGCGCCGCTCTGCTCCTCCTCTTCGCACTCGCCGGCCGACGGCTCTCTTCTGAGTGGAGGGCTTTCTTGATGCAACCAGTTTGTCCGCTTAGCTCGCAGCGTTACGTTGGCGGAGCGGAGGCCCGGAGGAGGAGGAGGCGGCCGCGGGGACAACCGGTATCGAGTCCGGAAATCAGGTAAGATGAAAAACTGAATCCAAAAAAATAAGGGTAAGAACGCGGTGGGATCCGAAAACGCGGTCGCAATCGAAGACGAGGGCTTTTGCTTTTTTTTCTGGACGGGTTTTGCAAACCGTCGCTTGGGTTTAGGGAAGGAGGAGGAGGAGGAAGGGGAGGGTGGCTGGGTCGGCCGATTGGCCGGCTGCCCGGTCGATCGTTCGGTCGTTTAGCTAGCCGGTCGGACGGTCGCTCCACAGCGGCCTCCGGCGGCTTTTCGCGCGAGAACAGGGCAGGCGCAAACGGCGCGCGCTCCCGAGAGGGTTCTCGCACAGCGGCCTCTCGCGGATCCGCGAAAACAAAAACTGCTCGAATACGTACCTCCCGGGATTTATTTCGCGGTCCGCAGAAACGTCCGCGGGGCTACGTTTCCACAATGAGCCCGGGTTGGTTTGTTCTGTAGACTATCACAAATAAATATAGCTTAAAGGGGCTAATAATATTGACCTTAAAATGGCATTAAAATAATTAAAACTGCTTTTATTCTAGCTGAAATAAAACCAATAAGACTTTCTCCAGAAGAACAAATATTATCAGACATACAGTGAACATTTCCTCAATCTGTTCAACATCATCTGGGATATATAAAAATAAATAAAATCAAAGGGGGGTGAATATTTCTGACTTCAACTGTAGCACTTATACTATTAAACTTTTTTATAAAAGCCACTTTTTTAAGCTTTTCAAGTTGTTAAATCCTAAAATACTCAGAGCTGCTGATTTCCTGCGACTCTCTACAGTGGATTGTCACAATATAATAGGTGTGGAAATGATTTGTAGTACCGCCGTTGTTGTGAACGGGTCTTCATCTGTGTTGTACAGTTGTGAAATGTTATGTGTTCGACTGTCCTGAATGCCTGTCTGTAACTGTGTTGTGTATTAAATGTTGGCTGTGTTTGTCTGCTTGTCTATCCCTCTCGTCAGCCCAACCGGCTGGGCAAGCTGGCGGAGCAGGTACTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGCGTGTGCGTGTGATATAAAGGGGTTGTTTACTCCTGCTGACTTCATGCGTTTTTTTTTCTGATTGGACAGCGTTCTTCAGGGTGTCCGTGGGCTCTTAATAAGCATTAAAAGTTGATCAATCAATGTAGAGAAAAAAAATATTAAAAAGTCTTACATGCTATTTTGCAGGTATTAAATGTGATGTCATTTTTGATTCTGCAATATATGGTTGTTTGCTAAAGTTTGCCTGAATTACATCTGTGAATATCAGGATGCTGTGTAGTTAATATTACTAGATTTGACATCATGCTGCTTTGTTTACTGCAGTAATCTCAGCATCATTATTTCTGTAGTTCTAAAGGCACCAACCTGCTGAATCAGCCAGATTTAATACATTTGTTTTCAGTATATGAATTATATTTTAGTTTTGGAGTAGTTTATATTTAGTAAATATTCATTTTCTTTTCAGCTTAGTTCCTTTATTAATCTGGGGTCACCACAGCGGAATGAACCGCCAACTTATCTAGCACATGTTTTACACAGCATCTAACCATCTGTGGGAAACATCAATACACACTCATTCACACACATACACTACAGTCCGGGTTTAAACCTCTTATAGATGTGTTTATTGCATAATAGGTGCTCTTTACATCAGTAGTATTTGCTAGGTGAGACTGATGCACTGAGAATGTGACTTTTAATTTGGCACAATGTTTGTTTGCTTTGAAATCAGCGTTTGCTCTTTGTTGTTGGCGATGGCAGTGGCTGATTCACATGTGTCTTGGCTCTGCTCTTACTGCACATCTGCTGCTTCTGTGTGTGCATATGGGGAGATCTGCTGATGTGTTTGCAGGACTCACCTTCAGGATTCAGGCTATTGCTGCTTTTCATTTCACCCAGTAACATCTCGCACACACACTGCAAAGAAAAAAGCTGCTCTTACTTAGAGTTTGTGTCTTGTTTCTGGTCCAAATATCTGAAGATTCTTTAATCAGTTTTTTAGACAAGCACATTATTGTGTTGTTTTCAGAAATAATGAGTCAAAATGAAGAATAAAGTTAAATTGCCAATTGGGCAGGCCAAAATAATCTAATGTCAGAAGGAAAAACATGATTATTTAGCCCATTGGCTGATTATTTTGCTTTTTGCAGCGGGATGTGCCTTCTGGGATGAGAGAAAGGCAATTATGGCACAAGCGTGGTGTTGAGGACGTCCATACTTTATTGTCTTTTTTTGTAATTTGTACAAGAGCAATTAAAGAAAATGAGTACAATAATTAAATGAAAGAGAAAACTATAGTAATAATGATGAGTCTATCTTCAAAATTAGTTGTAAATAATAACAAATGATAAAATAAAAACAGGTTTATGGCTTTAATAAACTGACTTTTCACTTTAATATTTCTTGTCTCTTTCAAAGTGGGAAGGTAGTGAGCTATTTCTGCTTTAAAATTAATAATTTCTAATATTTTTTTACTGTTCGACACATATAAATGAAAAATATTTCATAGATAATAAGTCAATTGACAATATACTGAATATTCAAAGCATTAGAATCCTCATAAACACTACAATATCCTCATGTTTCAGCTCTGTCCAGCTTTAGAGTTTTCCTCTGCGCTTTGGTTCCCCGAGCGTTAATTCTGGATCATATTTAACTAAAGGGATCCCACCACAGGTGTAAACACACTCATTTACTAATGCGATGTCCATAAAAATAAAGGCTTTTATTTTTGCATTTAATTTCTGAAGCATCTTTTTCCATGGATCTCCCCATTCTCCTGCACATGTGTGATGCATCTGCTGCTGTTGTGTGTTTCAG
Seq C2 exon
GGCACGGCGGGTCCGGATCCCACCACTGTATATCTGGACATGCGGGCGCTGCGGCACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058:ENSDART00000115030:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]