BtaINT0049306 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29400756-29403494:-
Coord C1 exon
chr5:29403385-29403494
Coord A exon
chr5:29400859-29403384
Coord C2 exon
chr5:29400756-29400858
Length
2526 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTGTGGTTTTTTTCTCCTAGTAT
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTTGGCCCCGGCTCAAATGGGTTGTAACAGATTCCAAGTACCTTTCAAAGCCACCTAAGGACTGGCAGCCCCTCATCTCACCTGCTAGCACAGAGCCAGCATACATTGAG
Seq A exon
GTAAGTCCCAAGTCTGGGACATACATTCTGGCTTTTCCTTTGGCTTTGGTTGAGGTCCCATAAAATTTAAAACTAACTTTTTGCAGTTTTAATGTTAGCAGGTCCCCTTGGTTTGTTAGATTGCCATCTTTTGCCCCATAAGATGCTTTCCAATGGCCCTTCTGTCCCAATTATTTTGAGCATAACTACCTATTCATGAGAATGACAACAAAGAAATTGACCCTTGTCGTGTAAGAAGGTTACAGAAGACTTTAAGAAGTTCAGAGGTTTAATAAATGATTTACTAGTGGAGGTATTTCTCTGCTGCTTTGGGGATGGGAGTGGTAGGGGTGAGGGGGGAAGTGAGAGACTGAAGAAATGAGGAGGAAAAATAGCTGTGCTTGAAAAGAACAAATTTAACAGATGAAGAGCAAGAAGAAACAGATGGCTGGAGTGTTTGGTATTGAAGGTTATTGTGGTTGCGTGATTGATTGATGACATAATCCAGTTGAGAGATTAAGACCTACTGCATACCAGGCACCAGGCCAAGTGCTTTAAATGCAGTATCTCAGTCAGTCCTCACAAGTACCCTGTGAGGTGGTGGGGTGAGGGGGCTGTTAGTAAACCTGCTTAGTAGCTAAGAAGACTAAGACTCAAACTAACTTGAGTCACCAGCCAAACGTTTGTCTAAAAACTTTGACTCAAAAATGACAGAGCTGGAACTCAGATTCCCGTCTGTTGCACTCTAAAAATTGTGCCCTCAAGTACTCTGCATCTTGCTTGAGACAGTGTTAGTAAATGTTCAACAGCTGTTTGCTAAATTAATGAATAAACATCCATAAATTATTTAAAAAAAAAAAAGATTTTGGGAAAAAATGCCCCCAACCGTGAGCCCTGGCTTCCTTGATAGCTCAGTTGGTAAAGAATCCACCTGCATGTAGAACTACTGTCCTATACATTTCCAAGCTTCTGCTGTTCTGAAAGAACTTGCAGTTTTCATTGGAATCCTCTTATTATCCGTAGGACATTGCTAGTGGGTTTCAAGTGTCCTTATAGAAAGTACAGCAAGAGGGACTTCCTTGCTGGTCTGGTGGCTAAGATTCCACTCTCCCAGTGTATGCCACAACTAAGAGTTTACATGCCACAACTAGAGATTCCACATGTCACAGCAAAGATCGAAGATCCTGTGTGCCGCAGCTAATACTGGTGCAGCCTAATAAATATATTAATTTTTTTTTTAAGTGATGGCAAGAAAAGTTTTCATGGGTGAGGGGTGGAGAGGTGGTGTTGGTTACATTGGGTTTCATGGGACTATGGGTCAGTCACGGTGAAGAATTGACCCTCCAAGTCTGAATCTCTGGAAAGAGGTCTGAGCTGGAGATAGAGAATTGAGAGTCATCAGGAGTGTGGTACCCTGATGGATAGAAGTGAAAAGAGGGCTTCCCTGGTGATACAGTGGATGAGAGTCTGCTTGCCAGTGCAGGGAACCTGGGTTCAGTCCCTGGTCTGGGAAGATTCCACATGCTGTTGAACATCTAAACCCATATGCCACAACTACTGAGCCTGTGCTCTAAAGCCCAAAGCTGCAGCTGCTGAGCCCACGTGCCGCAACTGCTGAGCCTGTGTGCTGCCGCCACTGAAGCCTGTGCACCTAGAGCCTGTGCTGTGCAACAAGAGAAGCCCGCACTGCGACTAGAGAGTAACTCGCAAGAGAAGCCCACACACTGCGACTAGAGAGTAACTCACACTCTCTGCAACTAGAGAAAGCCGGTGCACAGCAACGAAGACCCAGTGCAACCAAAAATAAATAAATAAATTTTTTTTAAGTGAAAAAAGAGGAGGAAGAACAGGACTTTCAGGGAATGCCAGCATTCAAAGGATGAGCAGAGAGAGTGAAGGGAAGGGAGAGAGAGAATGTTGAACAGGAAAGAGGATTATCACAAAAACCAAGAAAGGACAAAGTGTCAAGAAAGGTGTCAGAAATTACAGAAAGGTCTGATACAGTGAAGTGTGCAATATATGCTTTTGATTTAACAATAAAATAAAAAGTGACTGATTTTGGTAAAAAGCAACTTGAGGAGGATCGAGCAGCTTCGAGGTAAAAGCGAAATTACAGCTGATTGGTCTGGAGGCGTGAATAGGCCGTTTCCCAGGCTCCCCTCCCTGCCAGGAGCCGCTGATAGACTAACATGCCTTTGGCTCTGCTTGCTGTGTATTTGATGCTGTGCTTCTGTTAATGCAGCCCGAGTCACTTGTTTGTTTCCTCTGCTTTAGCAGCCACTTCACGCTGATTAACTAATTAACTAATTAAACTTTGAAGAATTTTTCACACCTGCTTTTGTTGAGCTTTGTCATTCCCTAGTTCTGTCTTTGTGTGATTGAAGTTTTAGGCCCAGTTGCCTACTCTCAGATATTTATATGAAGTGTTAAATTCAGCCCATTGTCATGGTTTTTCTAGGTCTCATTTATGGATTCTAGTTTTGTCATTTGAAATAACCCATTTTATTGTTTCTTGTGTTTTTGTTTTCTGTGGTTTTTTTCTCCTAG
Seq C2 exon
TATAAAACAAGCAAAGAAGGGAGTGTAATGGGAGTTACAGTGTCCCGCCTTGCAATGCTGTCTCACTGCCAAGCTCTGTCCCAGGCCTGCAATTATTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246:ENSBTAT00000006902:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]