RnoINT0047734 @ rn6
Intron Retention
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141827865-141832801:+
Coord C1 exon
chr7:141827865-141827974
Coord A exon
chr7:141827975-141832698
Coord C2 exon
chr7:141832699-141832801
Length
4724 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATTTTTGTTGTATTTTCCAGTAT
3' ss Score
8.67
Exon sequences
Seq C1 exon
GTTGGCCTCGCCTTAAGTGGGTTGTGACAGACTCCAAGTACCTTTCGAAGCCGCCCAAAGACTGGCAGCCGCACATATCGCCTGCGGGCACGGAACCAGCGTACATTGAG
Seq A exon
GTAAGTCGAGGCTGCTCGTATCCTGGCCTCCTTCACCATCAGCTGCAGAGCTAATGAGTGTTAGGACATTTGCTTGTTCTGTGAAATTTCAGTTTTTTAATCTGGTAAATGTCTTGTGGTGGACCTTCTGTTAAAATTTATTTTTGAGGCAAAGTTGAGTTTATTCACAGAGGTTTTAAAATAGTAGATTTGAAGCATGGGGTTAAGAGGAAAAGCCATACCCAGGAAGAAAGTACCAGCCCAGGCGTGAGTGTAGTCTGAGAGGAGTCACTGTGCCAGTCACTGCCCTTGTAACCTCTCAGTCAGGAGAAGGATGAGGGTATCGGACGTGCAGAATGAGGGGAAGCAGCTGTGCTGAAAGAGGGCGTGCGACGGAGAGAAACTAGAGATCAGCCAGCTACCGGCAGACTTGGTGTCGACAATGAGAGTGGGGCTTGACGACAGCAGAGCTTGCACACTGAACCTGCAGGACACTCAGAGCCGAACACTTTCTCTTTTTGTTTGTTTGTTTTGTTTACTCAGTAATACCCAGGGGTTTGAGCTTTTTTGTTAATTTTGTGTTTTTATTTTCCTCATCATTATTATTTATTTGGTTTTATTATGAGATTAGCTCTGTCGCTTGGCAGAGTGCATTTTGATCACACTCGCATCTCCCCTGACTTCCCAGACATACCCTCTTGCCCTACTCACCCTTCCTGGTCTCTTTTGTTTCACTTTTAAACTCATCAAGTACAGTCTATGCTGAGTGTTGGACCTTGACTGCAGTGTGGCTGACCTCAGGGTGGTGGAGGGCTCACCTCTAAGACGATGGCTCTCCTTTCCCAGCACTGTCACTTGCCAGTAGCTCTCAGCTTGGGGCTGGGAATTCATGGCCACCTTGCCTGTCCATGCTGGGACTTCGTCTGGCCTGAGCTCGAGCAGCCCTTGTTCCCGCTGTTGTAGCTGCTGTGAGTTCCTGTAGGCAGCTGCCCTGCTGTGCTCAGAGAACATTGCCATGGAGTCATCCACTACTCTGATTCTGACGCTTGCCTCCCCACCCCCTCTTCTGCAATCATCTCCAAGTCTTGGGAGGAGGCTGTGAAGTAGGGCCATTGAGGCTGAGTATTCTGCCTCTCTCATTCTCTAAGCCTCCACCAGGTATCAGTCTGAAAGTGTTAATCACCCTGTGTTGCTAAAGAAACTTCTCTGATGAGGGTTGACAAACCAGATTTCAATTGTAAATCTGCTCTGTGGGGTCAGGGAGATGGCTTAGTGGGTGAAGGGGCTTGCCACCAAGCCTGAGGGTCCTGAGTTCTAGTCCTAGAACTCACATAGTAGAAGGAGGCAGCTGACTCCCACACATTGTCTTCTAACCTCCACATGTGTATCATGGCATGCACACCTTCCAATCATAAATAAATACTATGAACACAGTCTGTGCTGTGAACAGAAGGCTGAACTACAAACTATGGTGGCTGGGGCAACGCTGTATGACTGACACCTGTACCTCTGAGGCTGTGCCCTTTCCCCTCTGCAGCCTCTGGAGACTTGCTCACCAGCTAGCTGCTAAATTAATGAGTAAGCACTTCCATTAACTTTTAAAAAGGCTCGGGGTGCAATACGGCCTGAAAGCTCTTGTAATAACAGGCATATGTAAGACCTGAAACAGCTTTGGCCATGCAAGAGTCTGAGGCACATGATGTTGACTGCAGAGGGGGTAGATAAGTGGGGGTGTGGGGCTGAGTATGTTTGAAAGACAGCCAAGCCAACAGGAAGTTATAGGATGCGCGCACGCACACACACATGCACACACAGGCACATACATGCACACATACACACACACATGCACACACAGGCACACACATGCACACATACACACGCGCACACACATGCACACATGCACACACACACGCACACACATACATACATGCACACACGCATACATACACGCACACACACACATACACACACACGCGCGCACACACACACTCGCACGCACGCACGCACACACACATGCACACACGCGCACACACGCACATGCACACACACGCACATGCACACACACGCACATGCACACACACGCACACACGTGCACGCACACACGCGCACACACGCACACGGACACACGCGCACACACACATGCACACACGCGCACACGCACATGCACACACACGCACACACGCATGCACGTGCGCACACGTGCACACACGCGCACACACACATACACGCGCACACATGCGCACACCCCATTCAGTGATGAGTCAGTCTCGTGGCTCGGTGCAGGCATGGTGCTCACCCCCAGGCCTGGGAAGTGGGTGTTCCCTGGATGCTGCTCTCCCATCTTAGTGACGTCCTGTGGTGGGGCCGCTCTGTCTGCTCCTGCAGCCTTACCTTGTCCTACCCTTATTGTGGAGCTGCACCCTGCTGTTCAGGGCCTGCCTGCTCCAGAGCCTCATATTATCACAGGGTTCTCCTGGTCAGGAGTTGGAAACTATTGAGGGGTTGTCAGCAGGAGAGAAGTAAGAATGTATTACACAAAAAGATCCTCTAGGCCCATCTGGATGGCTCAGCAGGAGGGCGGCTGCCACTCGAGCCTGACTAGTTTGAGCACAAAACTCACATAAAAGTGGAAGGAGAGAAGCAGCTCTGCAGACTTGTCCTCCAATCTCCATACATGTGTTGTGGTGTGTATGTGTGCTCTCCCCATGTCATACATACAAATAATAACAAAGCTTAAGAAGAAAAGATTTATCTCGATTGCCTGGTTATTAGAGTGGGAGCTGTAGGTTTTAGGTTTGTTTTGGTTCGGTTTTCCTTCTCTACACTTTATGTGTATAAGTGTGTACCTGAGTGCTCATAAGTGGACTGTGCTTGGACAGTGTCCCAGAGGCCAGAAGATGGTACCAGATCCCTGCACTGGAGACCCGGGCTGTTGTGAGGACCGAGTGGGTGCTGGGATCTGCACTGGAGACCCGGGCTGTTGTGAGGACCGAGTGGGTGCTGGGATCTGAGCTGGGTCCTCTGTAAGAGCATCCAGTACACTTCTGAGCCATCTCTCCTGCCTGACTCCCTTAAGAAGTTATTGAAGTGAATGGAAGCTCATGGGGATGGCTAAGAGAGGGGTGGGTAGGGCTGAAGGATGAGAGGAAGCAGGGTAAGCTGACTGGTCCTGCCTGAACAGAGAGAGAAGGCAAGTAATACTCATATTCCTGGTTTGCCACCTGGATGGATGGCAGAATGCTTCGGTTAAATAGACGATACAGACTCAGGCAGCATGTGGTGCCACGCCTTTAGTCCCAGCCTCAGGAGGCAAAAGCAGGCAGATCTTCATGACTTCAAGGCCAGCCTGTACTACAAAACAAATTCCAGGACAGCCAGGGATACAAGTAAGACCCTGTCTAAAACAGAGAGGAAGAGAATGCAGAGCGAGCCCTCAGAGGTGGGGGGATGGAATGGAGTGTTGGCAGCTGCTTTCCTGTGGCAAAGGCACTCTAGCAGTATGCCGGGGACAGATGTTAGCAAGGATGCCACACCCTGATGGCGTGACAGGGAGGAGGTGGGAATCCTCAGGAGTGCCAACAGTTAAGGCAGAGTCAGAGATTCTGGGTAAGATAGCTCATGCGAGTCTGAGGCACAGGTTGCAGCCAAGCCTGGGCTCCACAGTGAGACCTTGTCTCAGAGAGGGAGAAAAAACCTGAGAGATGGCCAGAGCAGTGGGAGGGAGAGACCAGCCTTCTGGATCCGACATCAGAAAGGCTGATGCGCTTGATAAAAAGCAACTTGGAAGGAACACTGAGGATAAAAACAAAGTGGAACTATTTATAGGTGTGCATAGGGCCTGCTACTAACTGAGGTGCCAGGGCTTTCTGTTTTTAGTATTTCTGTGGTGCTAGGGGATCCAACCCAGTGTCATGTGCGGCTAGGCAAGCAGTCTACCACTGAGTTGCAGCCCTAGCCGTGGGGAGTCTTACCCATGTAACTCTGCAGAGCTATGCTTCTCCGTGGGGCTACTGCTGTGTGTCTGCAGCTTCCATATTCAAGGCTGAAACTCAGTGCAGCCTTCAGAGGACATCAACAGTGTTGGCTTTCATAGGCAATCCAAAGATGCACACAAACACGTCATCATTCTGTATAAGAAGGCAAGCATCCGTCGTCTGTGGCATCTGACTGGAGTGTGGAACTGATCCACACACACTGCGGAGTGACAACTGCATTTGGTCCACACACACTGCAGACTGACTGCATTTGGTCCACACACGCTGCAGAGTGACAACTGCATTTGGTCCACACATGCTGCAGAGTGACAACTGCATTTGGTCCACACACACTGCAGAGTGACAACTGCATTTGGTCCACACACTGCAGAGTGACAACTGCATTTGGTCCACACACACTGCAGAGTGACTGCATTTGGTCCACACACGCTGCAGAGTGACTGCATTTGGTGCCATGCTTCTGTGCATACAGCTCATGTCACTTGGCTTTAGTTTTTTGGTGACCACGTCACATTGATGAGTGACTGAACTTTGAAGTCTTTTGACACTTGCTTCATTGTCTTCCAGTCTTGGCTTTATTTGACTAGAGTTTGAGGTCCGAGTGCAAAGCCTTAAATGTCTCCATTGAACATGTAAAATTAAGCCCGTTGTGATAGTTTGTCTGAGTTTAGGTTTGGGTTCTGGATTTTGTCATTGATAATAACCCATCTTACTGTGCTTCTTATAGTTTATTTTTGTTGTATTTTCCAG
Seq C2 exon
TATAAAACAAGCAAAGAGGGGAGTGTGATGGGAGTCACAGTGTCCCGGCTTGCAATGCTGTCCCACTGCCAAGCTCTGTCACAGGCCTGCAGTTATTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106:ENSRNOT00000086577:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]