BtaINT0049310 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29394732-29396421:-
Coord C1 exon
chr5:29396302-29396421
Coord A exon
chr5:29394847-29396301
Coord C2 exon
chr5:29394732-29394846
Length
1455 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
CATCTGTTTCAACTCCTCAGGGT
3' ss Score
8.23
Exon sequences
Seq C1 exon
CCAAGGTGGCTCTAGTGAAATGCCGAGACTTGCACTGGGCTATGATGGCTCATCGGGACCAAAGAGATGTGAGCTTGAGTTCCCTCCGGATGTTGATTGTGACGGATGGAGCTAATCCTT
Seq A exon
GTGAGTATTTCTGGAGTGTCAATCTGGGAATAGCCTTTCCTTTGGTAGGTTGAGGTTTTCGTCCCCTTTCCATAAGCAATTTTTTTGTTTTTAAACATCTGTATTGAGAGAGAATTCACATATCATAAAACTCACCCATTTAGAATACAGTTCAGTGGTTTTAGCATGTTCATAGAGTTATAACACTATCACCACTGACCTGAATTTAGAACATCATCATCCCCAAAAGAAACCTCATACCCATTAGGCGTCATTTCCCATTTCCCATCCTCTGTCCCTTAGCCCCGGGCAACTGCTAATCTACTCCTTGTCTCTATATATTTACCTCTTCTGGACATTTCACATAAATGTAGTCATGCTATATGTGGTTTTTTCTGACCAACTCCTTTCACTTAGCATATTTTCAAGGTCCCTCCATGTTGTAGCCTATGTCTGGACTTTATTCCTTTATACTGCCATAAAATATTCCTTTGTATAGATATATTACATTTCATGTAGTCATTCATCATTTGATGGATCTATAAGCTTTGAAAAGCACTCTGTTCTCACTCACTTAGATCCTTTGTCATGTAACTAAAAAGAGCAATGAGGAAATAACTTACTATAACCAAGTGTCTGGACTTTATATAAATTCCCTGTCAGCAAATCAGAAGAGTTCACAAAAGCTTTTTAGAGACCTTACTGTGTTGCCTCCTTTTCCCAACAAGCACAAACATCCTGAGCCTCCATAGGGTAGACTCAGGTGGAGCATCAGACACTACTGTGTTCTTTGCCATCAGTGAACTTTTGTCAGCAGTCACAGTGATCATTCTGGTATAAAACACAAGCCTGGGACTGACCTTAAAAAGAAACAAGTTAGTGAGTACACGAAAAGGATGGCGCTGAGCCAGAATATTAGTAATGCACAGGCCACAATGGAGCAGTGGCTTCAGGAAGAGTTGCTTACTTCCAAACCAGCTGCCTGTTGCCTGCAGTACACCTCTGCTATTGATTGGGCAGTTCAGTAGGAGCAGCCATATTCCACGCTGTAACTTTAAATAGTGTCAGTGACCTTTCATGGGCTGGACAAGCATTTGTTTGTCCTTGAAACCTGTCAACCACCTCAGAGATGCAGTAAAATACTTGCACAGAATTAATGGCTTGCCAGGTGGCTCAGTGGTAAAGAATCTGCCTGCCAATGCAGAAGACGCAGGAAATGCATTTTCAATCCCTGGGTCAGGAAGATCCCCTGGAGAAGTGAATGGCAACCCACTCCAGTTTTCTTGCCTGGAAAAAATCTCATGGACAGGGTCCTGGTGGGCTACAGTCCATGTGGTCACAAAGAGTTGGGCACGACTGAGCATACACTCACACAAATGATGTACAGATGTGTCAGCTTTCTGTTCTTTACCAGTTTCCTGCAGTAATGAAAATCAGACTTTCAAGCTTTCACATTCATCTGTTTCAACTCCTCAG
Seq C2 exon
GGTCTGTGTCATCCTGTGATGCCTTCCTGAGTCTGTTCCAAAGCCATGGTCTGAAACCTGAGGCCATCTGTCCATGTGCTACTTCTGCCGAAGCCATGACTGTCGCAATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246:ENSBTAT00000006902:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTGGCTCTAGTGAAATGC
R:
GGATTGCGACAGTCATGGCTT
Band lengths:
230-1685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]