MmuINT0049575 @ mm9
Intron Retention
Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100002034-100003762:+
Coord C1 exon
chr15:100002034-100002153
Coord A exon
chr15:100002154-100003647
Coord C2 exon
chr15:100003648-100003762
Length
1494 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GCTCTGTTCTAACTCCTTAGGGT
3' ss Score
9.87
Exon sequences
Seq C1 exon
CCAAAGTAGCATTAGTGAAGTGTCGAGACTTACACTGGGCCATGATGGCACATCGGGACCAAAGGGACGTAAGCCTGAGCTCTCTGCGGATGCTGATTGTCACCGACGGCGCCAATCCCT
Seq A exon
GTGAGTACTGGACGTAGAACTCCTAGGACATCTGACGGGCTGGGTGTCTTGTTCCTTGTCTATAAGCTGTTTCATTCTCAACGTATTGAGATGTAATTTACATACAACAAAGCTTGCCCGTTTCACCGGGTGGTGATGATGGTGAGAGAGCCTTAAATTCCAAGAGGCCAGCCTGGTCTGCAGAGTAAGTTCCAGGACCTGAGAGACCCTGTCTCAAAGCCCCTCCCAAAGAAACCCACCCCCACAAAAGAATAGCAACAAAACCAAATAAAACATCCCCCCTCAAAAAAAATTTTATAATGTATGTGTGTGTGTGTATATACATATATATATATATATGTATGTATGTATGTATGTGTGCTGTATGCTACATGTATGCACGTTCCCTTAGGCCAGAGGAGGGTATCTGCCCTTTGGAACTAGAGTTCCAGGATTGTGAGCCCCCTTACATCGGGTCCCGTAGAAGAGCAGGTTCTCTTTGACTCTCTCTCCAGCCCCCACAGTCCATCTCCATAGATTTGCCTGGTCTGCATACCTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTGGTTTTTACGAGACAGAGTTTCTCTGTAATGTCTGGCAGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCCCCACCGCCGCCCGGCTGGTCTGCATACTTTACAGGAATGTGATCCTGTGTTTGGTCTTTGGTGATAGGCTCCCCTGGGTTGGCATTATCCTCCGATTGGCATTAGTCCTCCATAGACGCACTAATGTGCGCAAACGTTCTTCCCTGCGTGGACTCAGAAGCTTCTTGAAGCCACACCTCTCTTGTTCACTCGGTGCAAGGAGGGGTTTGCAGGTGACTCAGTATAGCCGAGTGTGTGAATGTGGTATAAGTTCTTCCAAGCAGCAAATAAAGGGATGTGCACGAACTTGCAGAGCTCTTACCATGCTGCCTGCGCTTCTGGATGTGCACAAAAGGCTGGTTCTCCACTCAGGGTTCTCTGGTGAAACTCAGCAGGAAGCTCTTTCTCCTCAGTGAGCTTACGCATCATCCAGCCTTAAAAAGCAGGTGGAGAACTTGTAAGGAGCCAGAGAGCACCCCTAGAGCAAGTGTCACTAGAGCAAGTGGCCCTGCCACTGGTGAGGCGTCCTGGCTACAGTCGGGACTTAAGGAGGGCTGCTAGATTCCACCTGGGTGCCTATTGCCTACAGCGTTGTCGCTAATCTTGGCAGGTATAGCCTTTCTAGGCTGAGACTGTAGGAACTATCACGCATGTCTCATGGGATGGATGAGCATGTGTCAAACCACCTTGAAGGGACGCTAAGCTATTTGCATAGAATGAATGTTGTACAGTATGAGTTCTGACAGATGCACTCTGTCAGCTTCCTGCAGTAGGGAAGATGGTAGTCTTAGCTTTCAAGTTGCTCTGTTCTAACTCCTTAG
Seq C2 exon
GGTCTGTGTCGTCCTGTGATGCTTTCCTGAGTCTCTTCCAAAGCCACGGACTGAAACCTGAGGCCATCTGTCCATGTGCCACATCTGCAGAGGCCATGACTGTAGCCATCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-Dip2b:NM_001159361:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGTAGCATTAGTGAAGTGTCG
R:
GATGGCTACAGTCATGGCCTC
Band lengths:
230-1724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: