BtaINT0049790 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021458 | DLX6
Description
distal-less homeobox 6 [Source:HGNC Symbol;Acc:HGNC:2919]
Coordinates
chr4:14277314-14278954:+
Coord C1 exon
chr4:14277314-14277506
Coord A exon
chr4:14277507-14278760
Coord C2 exon
chr4:14278761-14278954
Length
1254 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTGAATCCTTTGCTTGCAGATC
3' ss Score
8.02
Exon sequences
Seq C1 exon
NCGGCGGCCGGCTCGCACCACCACCACCACCAGCACCACCACCACGGCTCGCCCTACGCGTCGGGCGGCGGCAACTCCTACAACCACCGCTCGCTCGCCGCCTACCCCTACATGAGCCACTCGCAGCACAGCCCTTACCTCCAGTCCTACCACAACAGCAGCGCGGCCGCCCAGACGCGAGGGGACGACACAG
Seq A exon
GTGAGAGGCCGCTGGGGCAGCTCGCTTCTCCCGCCTCCCGGCTGCCCCCCACCCCGCCCGCCCGCCCCGCTCACTTCCTCAATGCCCAGGCCTCCGCCGGCCCCCTCCCCCAGGCGGCCCGGCGCGCCCCCGGCCAGGCCTGGTGCGCGCCCGCTTGCCTGGCGCCTGCCTGCCGGCCTCGCAGGGCCGGGCCCCTTCGCGCCGCCCCGGACCCTAGGCTTCCCTGCGGCTCGACCCGCCTCGCTCCCTCGTCTCCGGCGCGTCGCTCGGGCCGCGCCTCCGACTCGGCGCAGGCTTCGCTCGACCAACTGGCCCGCACTGCGCTCTCCAGCCCGCAGGGTCTGTGCGCCCTTTTGCCTCTCTCCTCCCCTCCGGGTTTTGACCCACGTTTGGCAGGACTGGGGACATTTCTAGGCTAGAATTGGGGAGCGTGTTTTGCTCTCCCACTTAGTCCGGGCAGCCGGTGGCCTACTTTGCGTGGAGCGCTGGTGCGCTTCGGTGACCCGGGGGGAAGCTGGCATGGCCTCCGGCTCTGGTTAAGCTGGTGACAATTGGGCTCTCTCCCGCGGACTTTGAGATGTCTCCCACCCCTACTTCTTACGGGGCCCTCTCCCTTGGGTTTGTGATAGCTGCTGGCTACTCCTTTGTTCGTGGAAGTGAAGCCCAGGGCTCAGCACTCGTGGGGGACAAAGTTGCCGCGTGAGGCTCAACCCGCTCCGGTGCTGATCTGAGCCTCTGGTAGTGTTTTGTTTGGGTTTTGGTCCCTCTCGGCAGACTCATTTTCGAACACACCGAGGTATCTTGATGCACCCGGCTTCGAGCTAGTGACATCAAGCCAACTGGCCGCAAAATCACTAGCGTGCAAGCACACCTGAAGGCACTGTAAAGCCAGACCGAGGGGGCCCTGCTTCTCGGCGGAGAGAGCAGCTGCCCCGCGGCGCCGCGCATCCCGGAGAGCGGCCGGCGCCGCCTCCGCTGCGGCGGAGCTAGGCTGTTTGCCCCTCGGCCCAGGGCGCTCCCTTCACCCAACCACCGCACGTTATTTTAGAGCCAGAGTCAGGGTCTGAAAGTAGCTTTTTTGCAGCCGCCGGGATTACCCGGGCACTGGGAACCCAGAGAGGTCAGGATGGCTTGGGGACGCTTCGAGGAAACTGTTCATGGCTTTGAAGAGTCTCGGCACAGGCCAGGCCAAGCTCGGGGAGACTGCAGCAGTAGCCTCACGAGTGATCACTCCTCTGAATCCTTTGCTTGCAG
Seq C2 exon
ATCAACAAAAAACCACAGTGATTGAAAATGGGGAAATCAGGTTCAATGGCAAAGGGAAAAAGATTCGGAAGCCTCGGACCATTTACTCCAGCCTGCAGCTCCAGGCTTTAAACCATCGCTTTCAGCAGACTCAGTACCTGGCGCTTCCCGAGAGAGCTGAACTGGCAGCTTCCTTAGGACTGACACAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021458:ENSBTAT00000028605:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=NA C2=0.431
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=64.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGCACCACCACCAC
R:
AGTCCTAAGGAAGCTGCCAGT
Band lengths:
347-1601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]