BtaINT0049887 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53767107-53769611:-
Coord C1 exon
chr18:53769334-53769611
Coord A exon
chr18:53767199-53769333
Coord C2 exon
chr18:53767107-53767198
Length
2135 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GGTTCCCTCCACGCCTCCAGTGG
3' ss Score
4.43
Exon sequences
Seq C1 exon
GGACAGCCAGGGACAGGCAGACATGCGGCCGGGGCCCTCACAGGGCCCTTCAGGCCCCGTGACGGGAGGACCCTGAGCCCTGGGCCCGGGGAGGGGGCCATGGTGCTGCCTGCCCGACATGTCAGCCGAGGTGCGGCTGAGGCGGCTCCAGCAGCTGGTCCTGGACCCCGGCTTCCTGGGGCTGGAGCCCCTGCTCGACCTTCTCCTGGGCGTCCACCAGGAGCTGGGCGCCTCCGACTTGGCCCAGGACAAGTATGTGGCCGACTTCTTGGAGTGGG
Seq A exon
GTGAGTGCCCACCTTTCTGCAGGGGCTTCTCCACCCTCCACCCCCTCCCCCCGGCCCAGGTTTGGGGATGGGGGCAGGGCAGAGGGAGGAGGTGGGTCTGGGCTGGTTGCTGGGGGCAGGATGGACATAGGGCGAGCTTCCCATTCAGGAGCCCAGAACTTGGGGCGACGTGTGCCTCCCCCTGTGCCCCACTGGGCAGGGCAGAGCGGGGTCAGCAGAGGCCAGGGTAGCCATGACTCAGAACCAAGACTTGGGCGCCATGGTCAGCTGGGCTGGGCGCTGCCTCTTGTGGCCCCCCTGTACCCCCTCCCCGAGTCTAGGCCTAGGGACCTGCTGGGGAGCCCTGTCTCCTAGGGAACTCCCCACCACCACCAAAATGGGCTCCATGGCCCTCCACCCTGCCAGAGTGCAGGGGGAGTGGGAGAGACAGAACAGGGCAGCTGCCAGGGGCGCGGCCGACGGGCAGGTGTTCGGCGCCAGCCTCTCCAGCTGCCCCAACAGGTGCCCAGGCCCTGGGAGGGCGCGATGACTCAGGCCCCAGGGAGAACCAGCTCTGTAGACAGGCATCACCCAGCACCCCCTGGTTGGAGGAGGAACAACCAGGGTTCTTCTGGGAGGGCCCACTTTCTCTGCAGGTTCCGTGCTGCATGCCTCCCCCCCCACTCAAGTCCCTTCTGGCTGAGTGTTCCCCTGGAGACAGGTCCACAGGGAAGATGGTTTAGCCTCAGCCTCCTGCTTCGTCTGCCTTCAGCCCTTCCTGGCCAGGGCTCTGGTGCACTCAGGTTTCTGTCTCTCTCACATCTGCCATTCTGGCCCTCAGTAGCCTGCTCCTGGTCCTGGGACCCTGTGTGTCCCTGTCCCTGTCCCTGTGTCCTCTCTCTCTGCCTTCTGCTCCCTCTCGTGTCCATCTCTTTATGACCCAGGCCCTGCTTCTCTCCTTCTCATTTTGCAGACGGGAAGGTGGAGGCCAAGTACTTGGCCTCTGGGAGAACCTTCTCCCCACATCCCCCCAGCCCTTAGTAACTCTCTCAGCCCCCTTCTTGCTGCAGGATAAACTGAGACCTGAGGCGGGGACAGGAATCAGAACTCCTGTAAGGAGCGCTCCTTTTGTGGCCCGGGCAGCATCCTGCGGCCCCTCCCCTGCCAGGCTGCCGGGGCGTGGGGAGGGGGCCTGGGTTCCCGCTGCCTTAAAAGGGCTCAATGTCTTGGCTCTCTCCTCCCTCCCCCATCCTGGGCCCTGGCTGCTGCCTCCCGGCCGGCCCACTCTCCCCAAACCCCAAACCCCAAACCCTCTCCGTAACCCACAGTATCTTCCCTCATCCTTAGCTGTACCCATCTCCCTCTCTCTCCTGCCTCGGAGGCTCCCAGCCTCTTCCAGGCCTCCCTGTCCCCCTGCCCCTGAGTCTCCTGCCTCCACCCTCTGCCCTCTCTCTCCCAAACTGCCCTCTACCACATTGCTGGCTCTAGAACCTTGGGCAGAGGACTTCACCTGTCTTGGGTCTTGGTTCCCTATCTGTAGATAAGGAGTGATAGTAAAACCTCCTCCTGGAGTTGAGAACACAGAGAGAACGCATTTGACCGCGTCTGCAGCTCTGGTGCCCAGGCTGTAGATCCACGCTGGCTTCATCTCCTTCTCCTGTTCCTTCTCCTGGCCCCAACCCTAAACTTGGGATTTCCCAAAGTGTGGGCCACAAGCCACCTGTATCTGAGCCTAAGGTGCTGGATTAAATTGCAGGCTCTGGGCCATAACGCAAGACAGACTGAATGAGAGAGTGCGCTGGGGGTGGGCCAGGTCACCGGGAGTAGGGACTGAAGCCCCAGGAGCTCTGTGAACTGGGCCTGTTTCTTCTCTCTCTGGTTATCACAGACTGCTTTCAGCAGACTTGTTAGCTCAACCCGTTCATCCTGCACCCCGGAGAGCCCTCTGGCCTAATGTCTGTCCCAGAAAGGGGTTCACAGACATCACACCTCTCTTCATAGGAGGGCAGTTTAGGGCCCCCCAAACCTCACAAAACGTTTATGTGAAGAAGGAGGCAGAGAGCCCTCAGGGGAGAGGCAAGGACAGGGGACGGAGGGTGGGACTGCCTCGTCTCCAATGTCAGTCCCTGTGATTCTGGTTCCCTCCACGCCTCCAG
Seq C2 exon
TGGAGCCCATCGCGGCGAGGCTTAAGGAGGTCCGGCTGCAGAGAGATGACTTCGAGATTTTGAAGGTGATCGGACGCGGGGCGTTCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347:ENSBTAT00000017759:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(4.8=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development