BtaINT0049891 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53761149-53761603:-
Coord C1 exon
chr18:53761557-53761603
Coord A exon
chr18:53761239-53761556
Coord C2 exon
chr18:53761149-53761238
Length
318 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
CCTGTCCCTTCTCTCTCCAGCTA
3' ss Score
12.23
Exon sequences
Seq C1 exon
CTGTCACGGGGGTCCCCAGTCCCCGGGCTACGGATCCACCTTCCCAT
Seq A exon
GTAAGACCCCTCTTTTTCCCCTGCGTCAAGCCTGCTGCCCCTGTCTGCTGCCCCTGTCTCTGTCACCCCGTACCCCCATCCAGATTTAGGGCTCCCCTCTCTTTGTGGTTGCAGCCAGTAGATATTCTCTATTCACCCCACATCGACCAGATCTCCCTCGTTTAGGCTTCTCACCATATCCCCATTCGGGATATCCCATTTGGGGTCTCCCTAGATAACCTCTCTGACCTCGACTCCCCTCGCTGTCTCTCTCCCACCGCCGAGGGCGGCCGGGCCGAGCTGGGCTCAGATCGGGTCACCTGTCCCTTCTCTCTCCAG
Seq C2 exon
CTAGATGGCCCCCCGGCCGTGGCTCTGGGCCAATGCCCGCTGGTGGGGCCAGGCCCCATGCACCGCCGCCACCTGCTGCTCCCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347:ENSBTAT00000017759:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF139491=ALIX_LYPXL_bnd=FE(14.0=100),PF060097=Laminin_II=PD(1.2=6.2),PF032458=Phage_lysis=PD(15.7=87.5)
A:
NA
C2:
PF139491=ALIX_LYPXL_bnd=PD(6.5=23.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development