MmuINT0050313 @ mm9
Intron Retention
Gene
ENSMUSG00000030409 | Dmpk
Description
dystrophia myotonica-protein kinase [Source:MGI Symbol;Acc:MGI:94906]
Coordinates
chr7:19677557-19677981:+
Coord C1 exon
chr7:19677557-19677603
Coord A exon
chr7:19677604-19677891
Coord C2 exon
chr7:19677892-19677981
Length
288 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
CCTGTCCCTTCTCTCTCCAGCTA
3' ss Score
12.23
Exon sequences
Seq C1 exon
CCATCACGGGGGTCCCCAGTCCCCGGGCCACGGATCCACCTTCCCAT
Seq A exon
GTAAGACCCCTCTCTCCCCTCCCCGATCCCCATCTTAGATATGCTACCCACAGCCCTTCTCCCGTCCACGTTTAGGGTCCATTCTCCTTGGGGGTTCCAGAAGAAAGCTGCCCTTCACTCATCCATTCAGCATGCACTATCTACCAGCTCTCCCTCGTTTCAGGCTTCTCGCCAAATCCTCCCCAAGGGAACTCCCTATACTCCCGTTCTGGCCTCGACTAGATTCCCGCACTGCCTCTCGCCCTGCTGCTGGGCTCCGATCGGGTCACCTGTCCCTTCTCTCTCCAG
Seq C2 exon
CTAGATGGCCCCCCGGCCGTGGCTGTGGGCCAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCGCCGTCACCTGCTGCTCCCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030409-Dmpk:NM_001190490:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.492
Domain overlap (PFAM):
C1:
PF041569=IncA=PD(1.6=12.5),PF139491=ALIX_LYPXL_bnd=FE(15.8=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: