BtaINT0049900 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53762864-53764379:-
Coord C1 exon
chr18:53764294-53764379
Coord A exon
chr18:53762973-53764293
Coord C2 exon
chr18:53762864-53762972
Length
1321 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGGCCACCTCCTCTCCTCAGGGA
3' ss Score
9.64
Exon sequences
Seq C1 exon
GAGACGCTGTCAGACATGCAGGAAGGCATGCCGCTGGGCGTCCACCTGCCTTTCGTGGGCTACTCCTACTCCTGCATGGCCCTCAG
Seq A exon
GTAAGCATGGCCCCTTTGCAGCCTGAGAGGAGTGGATGGGGGAGGGGGAAAGTCCCTCCAAGAGGCCCTGGGGGCTGCTCCAGGTTATCACATCCTGCCTTGATGGCGCCCAGGAGACTTGCAGGGTCAATCTTGGAACCTTATCGTCTTGGGAAGTAAAGACTTGTAGGAGCCCAGAGTTGCAAGACCTTAAATTCTCAGACCATGAGAACTTTGAAATTTAGATTCAGTTGTAAAACCTCAGAGTCACAGACTTGGCCTTGCAGAATCTTCTCACTTTCCACTTTTCCATGTCTAGTGTACAGTCATGGGACCTCACAGTCTTAGAAAATAAGGAGTTTAGAATTGTTAAGTCAGTCTTAAAAGAACACAGACTCATTGAATTACATAACCACAAAGCCTTTTTAAAACATTGATTCTGCAAATAATACATTTGCCTATCACAATTATATCAGACAAAGCCCGCCAGCAGCAGCGGTCCCTGGCTCACACACACACACCTCCTTAACAACTGTGGGAACATGCTGTATTCTAACACGTTCTGTTATTGGACAATGTACTGCAAATGCCATTTCTTATCACGAACAAACTACCACACAATCCTGACCTGCTGGGGAGTGCTCTCCCCACTGGACCGGCAGGACTTAGTCAACCAGCCTTTCTGTCCTGACCTAAGCTGAATGAACAGCCACGAATTGGTCTTGGCAAAGGTGTCTTTATCCTCGTCCAGGGTCATTGGGTCCTTGAGGACCAGTTCCGTAAGAGGGACTGCTGAGTTGGAGGGAACATCACTTTTATTGCAATTTCATATTCCTTGGGAGGGTCTGTCTTCCTCCCAGCACCTGGGTCTGAGGGGGTAGGCTGCTCTCTACTGTCAGTCTTGGGATCCCACACCCAATCTGAAGACCACCTCTTTGGAGGTTGCCAGAGCTGGGCAGTGTGCCCCTCACTTCCTTAGTCCCTAAGGAGAGGGGCCTGAGAAAGGGACATGGAGACGGAGGGGAAAGGAAGATCTTAGAACATGGGTGTCTTGACTCCAGGTTCCCAAAGAAGGGAAGCTCGGCTTCCAGGGGCCTGAGGCCATGCCAGGGGCTGGCCTTTTCCTAACAAGAGGAGGACCTGTCCCTGCCCCACCCCCAACCCCCAGCCTGGCAATTTGTCCCCTTCACTCTGCCTCTCCCCCTCCTTAAACCACAGAGACTTCAGGTCTGGCTGCCCCAGGGCATAGGCTAGGTTGTCCTGCCTCTAAACCCAGGGGATAAGCAGCCTCTGGGGTGAGGCCAGTTCACCCTCCCACCCCTTGGCCACCTCCTCTCCTCAG
Seq C2 exon
GGATGATGAGATCCTAGGCTCCACGCCCATGGAACTGGAGGCCGAGCCATTGCCTGAGCCATTGCAAGAGCCCAGCCTGGAACCCACAGTGCCCCCACTAGAGGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347:ENSBTAT00000017759:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=NA C2=0.865
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGCTGTCAGACATGCAG
R:
TTTCCTCTAGTGGGGGCACTG
Band lengths:
193-1514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development