BtaINT0050082 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49117152-49118359:-
Coord C1 exon
chr22:49118024-49118359
Coord A exon
chr22:49117225-49118023
Coord C2 exon
chr22:49117152-49117224
Length
799 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GCTGTGGGGTTTGGTTTCAGGAA
3' ss Score
7.23
Exon sequences
Seq C1 exon
ATGGAGCAACCTAACAGAAAAGGCCACAGCCCAGGAAGGGCCTCTCAGGGCCAAGAGTGCAGATGGACCTCTGCGGGCCCTGAGTGTAATCTGAAAGACCTGGAGCGTGACCCGGGGAGGATTCTTCAGGGACCAGATTCTGGGTCACAGAAACTTCCTCCAAGCCCTGACCCTAAGACCCCACCTTTACCTCTGTCCGTGACCCCACCCATGCCCTCAGACTTGGGGCAGCCCCGGAAGTTGCCCCTGACAGGCTCTGACAAGAAGTACCCCCTGATGAAGCAGCGCGGATTCTACTCTGACATCCTCAGCCCCGGAAGCTTGGATAAACTTGGG
Seq A exon
GTGAGTGTGGCAGCCGTGCCCTTACCAAGCCTGAACCTTCCTTGTGGGTTTCATTTGCCCTTTCTTCCTTTCATCCATCCATCCAGGTGCCTATCAGTTTAGCAGTTTTCTACCCACCCACCCATCTGCCCATCCATCCCTGGTGACAGCACACGAGGATTGTCATCCATATACCCAGTGTCATGGGGCAGTGGGTTGGTGGGGAAGTATTTCCCCACTCCTGCCCCCAACTCTGGCTGGGGAGGGGGTCATGTACCGCTTAGATCTACAAGATAGGTATGAATTTGCTGGGTAGGATGGGGTCTGGAGGGTGTACCAGGCAGGGGGAACAGAAGGTACAAAGATTGGAGATCCCTGACAGGCCACTGCCCATGTAGAGGAGTAGAGAGATGGAGGGCGGGGGAGGACAGAGAAGGGAAGGGATATAACTAGGGAAGGGTGAAAACAGCCCCGTGGGTCCCACACAGCCTTAGGATGCTTTTAGGCAGAGGACCTCTGTCTTGTGGCCCAGCCCCTGGACACACACCAGGACTGTTCTCAGAGAGAGGAGGGGCCTGTGCATGACCAGAGCGGGGTTGGGCCAGGGTGTCCCAGGTGTCCATCGCTTGTCACCCACTTTGGCCTCTGAATGAGGAATTGTGCAAATTCCTCTCCGTTGATTCTTTCCCATCCCTGTCCCTGTGCGCCTGGAGTGCAGCTTAGTGGACTCAGGGAAGATACTTGGCCTTGGGCGTCCTTCCAGATCCTGCCTGTCCTCAGGATGTTTACACTCCTTCAAGGCTGTGGGGTTTGGTTTCAG
Seq C2 exon
GAAGTGTGCCATGGCCCCTGCACAAACCTGGACCTCCTGTGGCAGGCCAACCTTGACAAGTTCACCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGTGCAGATGGACCTC
R:
AACTTGTCAAGGTTGGCCTGC
Band lengths:
348-1147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]