GgaINT1011466 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3037366-3038147:+
Coord C1 exon
chr12:3037366-3037618
Coord A exon
chr12:3037619-3038074
Coord C2 exon
chr12:3038075-3038147
Length
456 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTCTCTCACTGCATTTCAGGAT
3' ss Score
9.81
Exon sequences
Seq C1 exon
AAAGCCCAGGATTGCATTGCAGTGTCATTCTCCTAAGAAGATGGATGAAGGAAACAAGGATTTGATGAATTCTCTGGGCAGGAGCCCCAACCCTCCCAGCACCAGCCGTGAGGCTTCATGCCAGAACCACAGACCAGGAAGGCGTTTGTTGCTTCCTGATAGCTGCAACCAGGGGGCAACAAAATACTCAGCCATTAGACGAAAGGCTTATTATCCCGGTGTCCTCACTCCAGAAGCCTCCAGCATCTCAGAG
Seq A exon
GTAAGTGCAAAGAGCAATTCTTTCTTCTACCGTGGACTTTCTTAAATGAAGTAAAAACAAGGTGCACCTGGTGTGGGGAAATAGAGCTTTCATCCCAGCTCCCAGCCCTTCAGTTCTGTCAGAGGCCTTTGTGCAAGTCCTTGACCTTCAGAAAGTGAAGCCTTGAGGTTTTTCCTGGTCACAGATGTTCTGCTTCCCTTATGGCCAGCGCTATCTGTGTCTTCATGATGTAGCTGCGTTTAGGTTAGCAGCAAGGCAGACTGCAGAAAATATTTGGAAGTGAAACCCTGATGATTGCTTACCTCATCAGCCCTCCATCCACACTGTACTGTGACAGTCACATTTATCCCTAAAGCTCTGGTAAAGTGAGTTTCATTGTCTCCCTGTCTTGACACCGAAACCCATCTTCCCACTGTGCTGCAGCTGTGCTCTCATGTTTCTCTCACTGCATTTCAG
Seq C2 exon
GATGTCTGTGCTGCACCCCGTACATACCTTTCTTTGCTAAACCAGGCAGACCTCGAACAGCACACCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=NA C2=0.360
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCCAGGATTGCATTGCA
R:
CTTTGGGGGTGTGCTGTTCG
Band lengths:
326-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]