RnoINT0048581 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7401663-7403136:-
Coord C1 exon
chr16:7402815-7403136
Coord A exon
chr16:7401760-7402814
Coord C2 exon
chr16:7401663-7401759
Length
1055 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GGTTCTGGGCTTTGTTTCAGGAT
3' ss Score
7.65
Exon sequences
Seq C1 exon
GAGCTCTGGCTCGGACAAGTCTCTGAAGAACGGCATGGAGGAGTGTGATAAAGAAGAAGCGAGCACTAGCTCTCAGGGCCCAGGATACTGTCCAGCGAACGTTCCTGAAAATCATGACCTGGAGAAGATGTTAAAAGAATCAAGCCGTAATCCAGAAAAGACTTCCCCAAATCCCGAACTCAAGACCCCACCTTTACCCCTCTCAGACTTAGGGCAGCCCAGGAAGTCGCCTTTGGCAGGCACCGATAAGAAGTACCCCATCATGAAGCAGCGTGGATTCTATTCCGACATCCTCAGCCCTGGAACCTTAGACCAGCTTGGG
Seq A exon
GTGAGTATGGCAGCTCTCCATTGCCAGCCTCGATCCCTCCATGCAGGTTCCGGTCAGCCATCTCTTTGTCCCGCTCGGTGTCAGCTTATCGGTTCACTTCCCAGCTGTTATCTATCCATCTGTCCATCCGTCCATCCACCTACCCACCTACCCCGCCATCCCATTCCTCAGTCCATTATTCTTCAGTCCCTCGCTAAGCCCTTCCTATGGGCCAGACCCAGGACCGAGCACTGGAGACGTAAGCAAAGCTAAGACATCCACATGCCTGTGGCGACGGCCTTCGGAAGTCCCGCAGCACCTGCCTGGTTAGGAAAGGGGGCATGGATGAGATCTAAAGGTTAGGGGCGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAGGTTAGGGGTGCATTGCTGGTCAGACGGGGGCTGAAGCACACATCAAAGCAGGGGGAGATGTGTGCTGCTGGGACCCCGAGAGGGCCTGGCCCATGTGAAGAAGTGGACATAGAAAGGGAACAGAGAGATCAAGGGATGATGCTGGGGCCTGGGGGAAGATGGGAAGGAAGGAACTAGAAGAGAATTCCCAGTTCCCTGTAGGTTCCAAGTAGCATTGGGAATATTTTAGTCAGGGGAAAGCCTGGAGAAGCAGCACAGACGCACTAGTACCCAGCTCACCAGTAGTACTAGAGTGGCCTTTGGGAAAGGAAATACACCCAGAGACAACTGACTTTGCGTCCCTGCCTCATGGCTTGGCCATTGGACATATGCTGAAGGGTTCTCTGGAAGGAAAGAGGCTAAGTTGAACTCAAATGGGGCAGGTGTCCCAGGTGGCCTCAGTCAGACATCCCCCATGGCCTCTGAACAATGTGTCTGAGCTCACCCCCATAATCCTGGGGGGTGCTCTCTGGTGGGCTGTTGGGAAACACCCAGCCTTGGAGTCACCCCTTGGTCCTGACTGTGTGGAGTATCTGTACACATTCAGGGTTCTGGGCTTTGTTTCAG
Seq C2 exon
GATGTGTGCTGTGGGCCCTACCTGTCCCAGAATTTGATTCGTCAAGCCGACCTCGACAAGTTCACCCCAAAAGGTCAGTGCCACGAGCATTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.770 A=NA C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCATGGAGGAGTGTGATA
R:
GAACTTGTCGAGGTCGGCTTG
Band lengths:
356-1411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]