BtaINT0050096 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49079397-49079778:-
Coord C1 exon
chr22:49079657-49079778
Coord A exon
chr22:49079503-49079656
Coord C2 exon
chr22:49079397-49079502
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CACCCCCGCCTCCCTGGCAGATT
3' ss Score
9.2
Exon sequences
Seq C1 exon
GTGATCAATGTGTGCTCTGACCAGAGGCTGCTGGACAGCCTGCGGGACTGCAACAAGCTGCTGGACATGGTGCAGAAAGGCCTCAGCGAGTACTTGGAGACCAAGCGGAGCGCCTTCCCCAG
Seq A exon
GTGGGGGACGCCTGGCCCATGCCTGCTCTGCTCCCGCCTGCCATCGAGGCTGGGGCCCAGTACCCTGTCAGGGTGGGGTGCAGGGATGTCAGTAGTACTGGAACAGCTGGGACCCAGGGCTGCCTGACGGCCCTCACCCCCGCCTCCCTGGCAG
Seq C2 exon
ATTCTACTTCCTATCTGATGACGAGCTGCTTGAGATCTTGTCCCAGACAAAGGACCCCACCGCCGTGCAGCCCCACCTGCGCAAGTGCTTCGAGAACATCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.7=100)
A:
NA
C2:
PF083938=DHC_N2=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGTGTGCTCTGACCAGA
R:
GATGTTCTCGAAGCACTTGC
Band lengths:
218-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]