GgaINT0019467 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2885903-2886666:+
Coord C1 exon
chr12:2885903-2886024
Coord A exon
chr12:2886025-2886560
Coord C2 exon
chr12:2886561-2886666
Length
536 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
AGCTCAACCTTTGTTTTCAGGTT
3' ss Score
8.53
Exon sequences
Seq C1 exon
GTGATGTCTTTGTGCCCTGATCCTGCACTGCTAGAAAACCTGCAGAAATGTAACAGATTACTGGAGCTTGTGCAGAAAGGGCTGAGTGAATACCTGGAGACCAAGAGAGGTGCTTTTCCCAG
Seq A exon
GTAACCTCAGATTTCAGTGGGCTGGATCACAGTGTCTGGTTCAGAACATATGAAAGGAGTGGTGGTTCACTCCAGTTAACTGTGCCAAGAAAGAGCGCAGCAGAAAAAAATCTAAGCTTATGGTATCGTCATAAGAGTGCAAACATCAGGAAAGGCTGTGCCTTTCAATGCTGCCATCTGATGGGGAGAATACAGGCAGGCACAAGAGTTGTCAGCTAAGGGCGGTCTGGTTGTATCGTGCATATCTGTGCCTTCCAGTTGTGATTTGTCTATAAGGGATGATATGAAGCAAAATAACCTACATGTAACTGTCCCTTATTCCTGAAGGAATACTGCTGTTGTTTGAAAGCTGCTTTTCATTGGTTAACAAAGAGTTAGAGAGAGGTAGATGGCTCGACCATGGCTGATACTTCTGCACAAACGCAAAGAGATTGATGAGCAGTCAAAAATGGGGCTTGTTCCTCATCTTGCCAGGACTCCGTCCATGATGCTGTGTTAAAGAGAACCTCCTCTCAGAGCTCAACCTTTGTTTTCAG
Seq C2 exon
GTTCTACTTCCTTTCTGATGATGAGCTGCTGGAAATACTGTCCCAGACAAAAGACCCCACTGCTGTACAGCCTCACCTTCGGAAATGCTTTGAGAACATTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.7=100)
A:
NA
C2:
PF083938=DHC_N2=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGTGCCCTGATCCTGC
R:
CCGTGCAATGTTCTCAAAGCA
Band lengths:
223-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]