RnoINT0048576 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7380694-7381046:-
Coord C1 exon
chr16:7380925-7381046
Coord A exon
chr16:7380800-7380924
Coord C2 exon
chr16:7380694-7380799
Length
125 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CACCTGTTTTCCCTTGGAAGATT
3' ss Score
6.7
Exon sequences
Seq C1 exon
GTAATCAATGTGTGCTCTGACCAGAGGCTGCTGGACAGCCTCAGGGACTGCAACAAGTTACTGGACCTGGTACAGAAGGGCCTCAGCGAGTACCTGGAGACCAAGCGGACTGCCTTCCCCAG
Seq A exon
GTAGGCACCACAGCCTAAGTCCACGCTGTGGGCCGTCAACTGTTCTGCTATGTCAGAGGTGCTGGGGCTGCCAGGGCCTAACAAGTCCGCCTGACCTTTTCTCTTCACCTGTTTTCCCTTGGAAG
Seq C2 exon
ATTCTACTTCCTGTCAGATGATGAACTACTGGAGATCCTGTCACAGACAAAGGACCCCACAGCCGTGCAGCCCCACCTGCGCAAGTGCTTCGAGAACATTGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.7=100)
A:
NA
C2:
PF083938=DHC_N2=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATCAATGTGTGCTCTGACCA
R:
GGGCAATGTTCTCGAAGCACT
Band lengths:
226-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]