BtaINT0050150 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49044012-49044455:-
Coord C1 exon
chr22:49044285-49044455
Coord A exon
chr22:49044143-49044284
Coord C2 exon
chr22:49044012-49044142
Length
142 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
3' ss Seq
GTGTCCCTTTGCCCTCACAGATA
3' ss Score
10.89
Exon sequences
Seq C1 exon
GGCTACCTCTCCTACGTCAAGAGCCTTCCACTCAACGACATGCCAGAGATCTTTGGCCTGCATGACAACGCCAATATCACCTTCGCCCAGAACGAGACCTACACCCTGCTTGGCACCATCGTCCAACTACAACCCAAATCCTCCACTGCAGGCGGCCAGAGCCGGGAGGAG
Seq A exon
GTCTGTGGCAGCAGGGAAGGGGCCCACCCAATGCAGGGCCAGTCTCCTGTCCACTATCCTGCCTGCTCCGCTGAATGAGGGGACTCCTACACGGGCTAATGGGGGCCACCCATGACCCATTTGTGTCCCTTTGCCCTCACAG
Seq C2 exon
ATAGTGGAGGACGTGGCCCAAAACATTCTGATCAAGGTGCCCGACCCTGTCAACTTGCAGTGGGTCATGACCAAGTACCCTGTGCTGTATGAAGAGTCAATGAACACGGTGCTAGCACAGGAGGTCATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:72
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.9=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTCCTACGTCAAGAGCC
R:
ACAGCACAGGGTACTTGGTCA
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]