MmuINT0050563 @ mm9
Intron Retention
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32075339-32075769:-
Coord C1 exon
chr14:32075599-32075769
Coord A exon
chr14:32075470-32075598
Coord C2 exon
chr14:32075339-32075469
Length
129 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
ATGTCCCTTTGCCCGTGCAGTTG
3' ss Score
8.85
Exon sequences
Seq C1 exon
GGATACCTCTCCTACATCAAGAGCCTTCCTCTCAATGACATGCCTGAGATTTTCGGTCTGCATGACAACGCCAACATCACCTTTGCCCAGAATGAGACGTTTGCCTTATTTAATGCCATTCTCCAGCTGCAGCCCAAATCCTCTTCTATGGGCGGCCAGAGCCGGGAGGAG
Seq A exon
GTGGGTAGTGGTAAAGGGCCAAGGTCTGAACAAAGCCAGGCTGCCCTGTCCTGCCTGCACCTGGGACTAGAATCTTGCCATTGCTAAGAGTAGCCAGCTTTGTCCCCTCATGTCCCTTTGCCCGTGCAG
Seq C2 exon
TTGGTAGAAGATGTGGCTGAGAATATTCTGCTCCAGGTTCCCGGGCCTATTGAATTGCAAGAGGTGACAAAAAAGTTCCCTGTGCTGTACGAGGAGTCAATGAACACAGTGCTGGTACAAGAGGTCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-Dnahc1:NM_001033668:74
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.9=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGATTTTCGGTCTGCA
R:
CCTCTTGTACCAGCACTGTGT
Band lengths:
254-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: