DreINT0009325 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39616092-39616478:+
Coord C1 exon
chr24:39616092-39616259
Coord A exon
chr24:39616260-39616335
Coord C2 exon
chr24:39616336-39616478
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
AAGATTGTCGGTGTTCACAGGAA
3' ss Score
5.37
Exon sequences
Seq C1 exon
AGCTATGTGGACTACATCCGCAACCTGCCTATCAGTGCTGAGCCTGAGGTCTTCGGCCTGCACAGCAATGCTAATATCACCAAAGACAACCAGGAAACCAACCAGCTGTTAGACGGAGTGCTGCTAACTCTACCAAGACAAACCAACAGCGGAGCCAAATCACCACAG
Seq A exon
GTGGGAGGATTCAGATCAGAGGTCAGTAGTTTTGTGTACCTGCTCTTTCTGACAGCAAGATTGTCGGTGTTCACAG
Seq C2 exon
GAAGTCGTGGATGAGCTAGCAGAGGGAATGCTGGCCAAACTCCCCTGTGATTTTGACATAGAGATGGTGACCAATAAGTATCCTCTTTTATATGAGGAGTCGATGAACACCGTCCTACGGCAGGAGCTCATTCGCTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGCAACCTGCCTATCAG
R:
TCCCTCTGCTAGCTCATCCAC
Band lengths:
181-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]