GgaINT0013875 @ galGal4
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14985785-14987813:-
Coord C1 exon
chr14:14987646-14987813
Coord A exon
chr14:14985928-14987645
Coord C2 exon
chr14:14985785-14985927
Length
1718 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCATTTACTGCCAATTTCAGAAA
3' ss Score
7.47
Exon sequences
Seq C1 exon
TCTTACATTGAATACCTAAGAAGCTTACCAAGTGTGACACACCCTGAGGTGTTTGGGCTTCATGAGAACGCAGACATTACCAAGGATACCCAGGAGACTAACCAGCTTTTCAGCGGAGTGCTCCTGACTTTGCCTAGAGTGGCAGGGGGAGGTGGCAGATCTCCTCAG
Seq A exon
GTAACAGAGATGGGAATGTTCAGCTTGCAGCCTGGAAAGGTGCCCTCATGTGCCCCACATCTCAGAGTAACCCTATGCCTTCCATCACATACAGGAGTGTTACATAGGTGTGTAAGGAACAGGGGGTGGGTGTGTAAAGAAGCAGATGTGGACTGGAAGAACCTGGATTGAAATGGGTATACTGAGGTATTCAGACACCACACAGCACCACCTGGTTGAGTAGAATATGTGGTTTGAGTGGGAAAGTTTCTGTCATCTATCACGTTTTAAAACAACAGTGCAGTGCTTCATTTCAGTCATGGATTGTAGTTAAAGCCCAGTTTGCAAGCACAGCTGGTGAAGAACCTCCAGTTGCATCCATCCTGAGGCACTTTTACAGCAGGACACTGATTTCAGTCTGCCAGTTTCAGCAATGGAGGTTCTTGCACTGGCCTGGCTTCATCCAGCAGTGGTTTTGTGACTGTCCGAGCTATTCTCACTAAGGGGCAGCCTCTGGAGAGCCTGGAAGTACCAACCCTGTCGGCCACCACGCATGCAAGTGTAAGCTTAGCTGGAGGGGAAGGTCTTCTTCCCAGTAAAGCCTGTGCTTTAATGGCACTTTCACTCCTATGGTATTGCTCATTGAGCGTTCAGTTTCTGAGGTATGATTTTTTTCTTACACCTGACTGCTTCAGTTCCTGCAGTCCCAATCTCAAAACTGTGTGTGACTTGTGTGGAACAAAGGGAGGGACTGGTTTGGCACAGCAAAACCGCTTGAACCCAAACCTTGCTGTTGTCGGCCCTTCCATGGGACCTGGTGGTGAAAGTGCTGGGCACTGCTTTCCTTCCTTTGTCCCGGCAGCTCAGGTTGCTTCAGTCCAGTCTGTGCCCCTTTGCCACAGGTAGATGACCTTTTGCACCCCTCAGATGGGATATTCTGTATTTTATGCACATGTGGATTTGTGAGAAATGAAACCAGTGGAGCCTCATTTCCTGTGAGGGTGCACAGCGATTGCATTCTGATGTCTGATGTGCTGGAAGGAGAGCTGCTCTCGTGGCTGGGATGCTCCTGTTGTCTGCCTCTCATTTCTTCCTGCATACCCGTTGTGGTTTGGTGATCTTTTTGTTGTCAACATTCCACATCAGAACGTCATGTGAACCAGTGGGAGTTAAAGACTTAATGTTCTGGTTCCGTTTGCTGCCTCTGATGGACAATGCAGGAACACACTGGAGTGTTTTTTTTGTTAAACCCATCTACTGGCTCTCTGCCCTCCTCCCCTTGTCCCGGAGCGCGGCCCATTGCTGGTAGCCCTTCCTTTCTTTTTCCTTCACCCTTTTGTCACTCCTTTTTTCCTCCTCCTTCTCCTCCTCCTCCTCCTTTTCTTCTCTTTTTCCCGGGCTGGTGCCCCCCCGTCACGGGCTCAGACAATTCCGTGACAATACCTTTGCTTTTCCTTCGTTAAGGCAGTAGGAGGATTTTGCCTGCCTGCCCTCCCGCCTCACAGTTGCCTAAAACCTTTGTTGCAAATTAAATTTCAGTTGTCAGTACATTTAAAATCAGTGAGATAAAGAGCTGCAGGCACATGGGGAGACAGACAGGCTGATGTACAAGAAAGTAAGATCATGTAAGCATTACTTACGTGCTTATACAGCAACAGTGTAAAGTCCGCAGTGTTTTGAGGAGTTTAATGAATAGAAAGTAGGGGAAAAAAAGAGTTCTCATTTACTGCCAATTTCAG
Seq C2 exon
AAAACTGTTGCAGATTTGGCACAGGACATCCTATCCAAATTACCACGTGACTTTGACGTTGAGGAGGTGATGAAGATGTACCCGGTGCTTTATGAAGAGTCCATGAATACAGTCCTGAGGCAGGAGCTGATTCGATTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGAATACCTAAGAAGCTTACCA
R:
TGAATCGAATCAGCTCCTGCC
Band lengths:
303-2021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]