MmuINT1008814 @ mm10
Intron Retention
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:119928703-119930269:-
Coord C1 exon
chr7:119930102-119930269
Coord A exon
chr7:119928846-119930101
Coord C2 exon
chr7:119928703-119928845
Length
1256 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
TCTCGTGTCTGTACTTAAAGGAA
3' ss Score
6.25
Exon sequences
Seq C1 exon
TCTTACATTGAGTATCTCAGGACCCTCCCCATCACAGCACACCCTGAAGTATTTGGTCTCCATGAGAATGCTGACATCACCAAGGACAACCAGGAAACCAACCAGCTCTTCCAAGGAGTGCTGCTGACCCTGCCGAGACAGTCCGGAGGGAGTGGGAAGTCTCCTCAG
Seq A exon
GTGACCAGGTTTCCCTCTGGCGGGCATTCAAGACTACAGGTGGTAACTGGGAAGGCAGGAATATGGGGCCTGGTATCTATCTCTGAGCTAGGTGCTTCAGTCCTACTGCTAGGTCCTTAAATACACAAAGGAAACAACTTCCAAAATGCCAGTTATTTCTAAAAAGAAAAACTTCATAGATCCTCCTATATCAAATACCACGTATACTCTACATATATGTTTTAAAACTAAATGTATTTTGGCTCAGAAATATCTACTTTAAAAATTGCAAGTGAAAACCATTAGTGGATACCTACTATAATTCCCATTAAGTTGTGACTGGGACAGAAGGAAGGAAGAAAAGAAGACAAACTAAATTTTAAGTTCTTCTGGGGTGATATTACTAGCTAAAGTCCTAGAGCTGAGGCTTTGGTGGCCTCTTGTTAAAGGAAGGGATGGATCCTTGAGGGTTAGTGAGCTGTCAAATTAGCACCAATCTGAGACCTTCTGTTTGGAAGGAATGGAAAGAGAAGGACATCAAGACTTGAAAAGTCAAATTCTCTCGCCATGTAATTCAGCATTGTTTACAACCACAGTTAGACTGGGGTACTTCTAGTAGTCCCTCTCATCCTGCCTTCCTCTTCTCCTCCTGAGCTGCCTCCCATTCAACACTTTTCAGTTTTGAACCTTGCTGATGGTGTTCACTCAGTTTCAGTGGTAATTGGTGTGTGGATCACACCAGTCTGGTTGGTGTGTCCTAATATAGGACTAGGGAAGGAACTGCTGTCCAGCCAACCAGCCCCACCAGGGTAGGGGAGATATCTGGCTCTGCCTCTTGGTCTGTCCTCTTTGGTCCACTGTCTCATTCCCTACTTGGCTAATCCCAGTGTCACAGGCTTGTCTTGCTCAATGTTGGAGTTAGACCTACTACCTTTCCAAGTGTCACTTGCATTGAGAAAGACCTCCCAACTTTGAGTGCTGTGTGGGAATTCTCATTGTGGGTGACTTTGAAGGTAGGGCCAGTGTTCAGTGCTACCCTGAGGCTACCTGACTGACTAAGGAATACAAGGAAAGAGCTGTCATTACTCATTATTTTGACATTCTGGAAAATGTCCTCACTAAGGATAGTGAGCTAATAATTGCCCTCCTTCCCTCCAAGGGGCAGAACTGGCTTCTGTGGCAGAGTTCCCAGGAAGGGCCAATGCTTAACATCAAGTGTCTCCAAATAAAGCCTGCTGGTGTAACACTTATTCCCTTTCTCGTGTCTGTACTTAAAG
Seq C2 exon
GAAGTGGTTGAGGAGCTGGCCCAGGATATACTCTCCAAGCTTCCCAACGACTTTAACCTGGAGGAGGTAATGAAGAAGTACCCCGTGGTCTATAAGGAGTCTATGAACACTGTTCTAAGGCAGGAGCTCATCAGATTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273:ENSMUST00000208701:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTACATTGAGTATCTCAGGACCCT
R:
TGTTGAATCTGATGAGCTCCTGC
Band lengths:
310-1566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types