BtaINT0050538 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18849130-18852013:-
Coord C1 exon
chr25:18851846-18852013
Coord A exon
chr25:18849273-18851845
Coord C2 exon
chr25:18849130-18849272
Length
2573 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCTAATGCTTACACTTTAAGGAA
3' ss Score
5.84
Exon sequences
Seq C1 exon
TCGTATATCGACTATCTCAGGAACCTCCCTATCACAGCCCACCCAGAAGTGTTTGGCCTCCATGAGAATGCTGACATCACCAAAGACAACCAGGAAACCAACCAGCTATTTCAAGGGGTGCTCCTGACCCTCCCTAGGCAGTCAGGAGGGAGTGGCAAGTCCCCTCAG
Seq A exon
GTAACCAGGCTTGAATTCAATTTCCTAGGCAATCTTCCCTCTAGTGGGCATGCAGGATTATGGGTGATGACCAAGAAGGAAGAAAAGCAGAGGCGTGGCAGACCCCTGAGGAAGGGCATGGATGCTCTGGTCTTAACTGTTGAGAGCCCTTAAATACTGAACTAGTTTCTTAAAATGTCAGTCATTCCTGTATAACCTTCATGATTCATTGTTACAGCCACATATCATCTATACTCCATTTACATAATATTTTAAAACAAATCTCTTTTGCTTGAAAACATTTTAAAAACTGCACATCAGGATTGTAACTGAAAACAAATCCAGTACCATTTCGATAAAGTCATGACAGCCACAAAAAGAAAATGAAGGCTAAACATTATTAGGTTCTTCCGGCTGCTGCTGCTGGGGTCTTGCTGGCTCCTTGGGAAAAGAGGAGGATCAACAAGTGTTACAGAACATTTAATTAGTCCTGACCTTAACATTCAGAAAGTGAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTCTGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACACTTACTCTTTGGAAGAAAAGTTATGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAATGTCCATCTAGTCAAGGCTATGGTTTTTCGAGTGGTCATGTATGAATGTGAGAGTTGGACTGTGAAGAAAGCTGAGTGCCGAAGAATTGATGCTTTTTAACTGTGGTGTTGGAGAAGACTCTTGACAGTCCCTTGGACTGCAAGGAGATCCAACCAGTTCATTTTAAAAGAAATCAGTCCTGGGTGTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTTTGGTCACGTCATGCGAAGAGTTGACTCATTGGAAAAGACTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGATGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACATGAGTTTGAGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGTGATTCATGGGGTCCCAAAGAGTCAGACACAACTGAGTGACTGAACTGAACTGAACTGACCTGACCTGACCTGAGACTTTCTCCTTGAAGGGAATGAAAAGAAAAAGGTGGCTAAAACTTGACAAGAGTGACTTTCTCACCATGTGATTCAATATTATTTCTCCAATATTGGAGACACCTGGAATCATTTTGGGTGCCTCCTATGATCATTTCACTTGGTCTACAGATGAGGGCAAAATGAGCCGTATAAGAAGTGACCCACGTCAAGGCACTCGTAAACCCAGAGGCAGTGCCAGATCCAAAACCACATCTCCTGACTCTGTCCTGTTCTCTCTTTTCCTTTTCTTCTCTTCTCCAAGTTCTAAGCCACCCCATGTTCAACTTTTCTTAGCTGTGGATTTTGCATACAGTTGGCTTTGCATAGCTGCAGGTTTTGCATCCTTGAGTTTGACCAAGATTGGAAATATTCAGAAAAAAATTTCCAAAAAGTTCCAAAAAGCAAAACTTGGATTTGCCTCACTTCAGCAGCTATTACATGACATTTACATTGTATTTACCACTATTTATATAGCATTTACATTATTTTAGGTAATATAAGTAATCTGTAAATGATTTAAAGTATGAAGGGAAGGAGAGATGTGTGTAGGCTATATGCAAATACTACACCATTATACATAAGGGACTTGAGCATCTGTGGATTTTGGTTCTGCAACCAATTCCTAGTGGATTCCAAGGGATGATTCAATTTGGTTTCTTGATTTGGTTCATAGTACCATAAATGGTAATACATGTGAAGATAAAGCAGCCTGGTTTGTGTGTCTCAACTTAGGAAAGGAAATAGCTCTCACAGTGGGAAGGGGGGAAGAAGTATACATTCCAGCTTCCCAGAGTCACAGCGTGGCAGAGCTGTGTGTGTCTCCCATTCAGGTCCTCCTACTCCTCTTCCTACTCTTCCTCTAGGCCTTGTCCATTCCTTACTTGGCTAAATTCACTGGGCTATTCTTGCTCAATGCTGAGGAATGGTCTACTGCCTTCCCAGATGTCCACGTCACTGGCTCTGAGCAAAGTCCCATCTGTACCAGGAGCTGGTTCTTAAGGAGCTGGCTATGAGAGCCTTGGGAGATTGTCTCCCAGGAGTGACCTTGAAGACTGGAGAAGCTCTGCAGGGTTCAGCACTTCCCTGAGGCTACCTGGCTGGCTGAGCAGGAATTCCCTGTCCAACCCTCAGGCCTTCACTCTGGCCATGAGAACAGGACTCTCATTGTTTGGCTTAGAGGCAATGTCCTCCCTAAGTCTGGGGCCAGCAAGGGTAGCCTCCATACCTTCAAGGCAGAATTGGCTTCTGTAGGAAAGTTCCAAAAAAGCTCCTATAGACTAAGTTTAAAAAGACAAATGCTCACTGCCTTAGGTTTACCTGGACAAAGTCACAGCCCAGGGGCCTTGTTTCTCATTCACCTCTCTAATGCTTACACTTTAAG
Seq C2 exon
GAAGTGGTTGAGGATCTGGCCCAGGACATACTCTCCAAGCTTCCCAATGAATTTGACTTGGAGTTGGTCATGAAGTTGTACCCTGTGGTCTATGAAGAATCCATGAACACTGTCTTAAGGCAAGAGCTCATCAGATTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560:ENSBTAT00000024702:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]