BtaINT0050229 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54041951-54043765:-
Coord C1 exon
chr17:54043585-54043765
Coord A exon
chr17:54042097-54043584
Coord C2 exon
chr17:54041951-54042096
Length
1488 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TGTCTTCCTTGTGCCTCTAGGAT
3' ss Score
12.33
Exon sequences
Seq C1 exon
GTCACCGAGAGCGAGCCCAGTGTGATGTGGCTCTCAGGGCTGCACATCCCAGAATCCTACCTCACGGCCCTGGTGCAGGCCACCTGCCGGAGGAACGGCTGGCCACTGGACCGATCCACTCTGTTCACCCAGGTGACCAAGTTCCAGGACGCAGACGAAGTGAATGAGCGGGCAGGACAAG
Seq A exon
GTATGGCCAGCTCCCTGTAGACTCACAGTCTCTCCTGTAAGGTCTCCCTTCTGGAGCTGAAGGCGTGAGCACAGCGTGGGCCCGGATGGGCCAGGAAGTGTTTGAAGGTCAGACTGCTGCAAACACTGGCTGTGTCTGTGCACTGTCCGCATGGGCCCTGGCATCTCTGAGGGTGTGTCTGGATGCTTCTTGTCCGGTTTTTCCTTTGAGATGCGGGCTGATGTCAGGGGAGAGCTGAGCCACATTCGCCCTGCTTGTCTATGGGAAATGGGCTCCTAGGGTTAGAGTGTGAGCTTTCAAAGAACTAGATCACCAGGTGGCTTCCCAGAACCATGAGAACCCGGGGGCATGGAAGCCAGGGAGTGGGATAGGCGAGGTGCGGACCAATTGTGCTGTAACTTCAAGTCCCTTAGACACTGGCTACAGTCTGCAAACTACAGCTGGAAACTGCTATTTCTTGGGGGAGTCATGTCTTAGAACAGTGGTCCCCAACCTCTGGGATCTATTTCTGATGATCTGAGGCAGAGTTGATGTAGAAATAAAGTGCACAAGACATGCAATGCACTTGAATCATCCTGAAACCATCACCCCAAACATCGCCTCTGACTCCCAGTCCGTGGAAAAATTGTCTTCCACGAAACTGGTCCCTAATGCCAAAAAGGTTGGGGACTGCTGTCTTGGAGTGAAGTGCAAGCACAAAAGCCCTCTTGATCTATTGATAGCTCGGGGAGCAGGGATTTATAGTGAACATTCAGGAATGTTCCATCCCCATTGTAGAAGCCCCAGAGAGGTCTCAAAGGGACTGGCGGTGCTGGGGCCTCCACCCTCTCTGGGCCAAGTGGCCGCCCTATTCTCCGCTCCTGGGCAAGTATGCACTGTTCTCCTCCCCGAGACCGCTTCCTCTGTGAGGCTTCAGCTCCCTGCTTTCCTGTCACTTTGGCTCTGGGGGGACTCGGAATTGCTCTGGTGCCAGCTGACTCTGGGGGCCCCAGGCCGCTAAGTCTGGGGTGCCAAATCGCTGGGGAGAGACACCCACCCCTCCTCCATGGCACGGTGGCCATAGGGAGGGTCATGGGGTCTCCAGGGCATTGGATCTGGGCTGTTCCTCTACAAAGGGAAAGTGGGCCAGTTAGAAGTGGTGGCCATGTCTTTTGGGAACAGTCATGGGCTGTGTCTGGGGAAGGAGAATCGGTTAGTTACCTTTTTGTTTACTGATATGCACATCCCCTAAGAGCCATACAGCAGAATTATACGTCCCCCTGCCTGAGTCCAGGGTTTCCCGCATGGCTCAGTGGTAAAGAATCCACCTGCTAATGCAGGAGACTCGAGTTCTATCCCTGGGTTGGAGGAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGGAAATCCCATGGACAGAGGAGCCTGAGGGGTTGCAAAAGAGGCAGACACGACTGAGGGACTAAGCAACAATGCCTAAGCCTGGCTGTCTTCCTTGTGCCTCTAG
Seq C2 exon
GATGCTTTGTCTCAGGACTGTATCTAGAAGGCGCTGACTGGGACATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTGGTTGACCTGCCCATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:77
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGAGCCCAGTGTGAT
R:
GGCGATGGGCTTCAATGGG
Band lengths:
310-1798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development