BtaINT0050331 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54334088-54336347:+
Coord C1 exon
chr19:54334088-54334231
Coord A exon
chr19:54334232-54336164
Coord C2 exon
chr19:54336165-54336347
Length
1933 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CCCGTAACACCCTGTTTTAGGAG
3' ss Score
7.35
Exon sequences
Seq C1 exon
GAAAATGCAGAACTCTTCAGAGCAGATACGACAAGCCAGTCCTGGAAGGATTACGTCAACTACATTGACAGCATGGTCTTAGATGAATTTGACCAATTCATTCGCAAGTCTCTAAATTACCTGATGGACAACATGGTTGCAGAT
Seq A exon
GTAAGTGACAGGCGTGAGATTTAAGTATATGCGTACACATACATATCTATTATAAATATGAGATAAGGTTTACACTGGAGTCTATAATCTGTGGTTTCCTGATGAAAGAACAGACTTATTAAAATCTGCCCAGGGTGACAAACTTATCCTGATTTCAAATCTGAAAGTCCTGCACCCCGGGACATCTGGTCACCCTGAATGTGCTGCAGCATAAATGGGCTAAGCACACCGCCACAGAGCCGAGCTGACCTGTGTTGCTGTCGGTTGAGGAAAAGCAGGCACCACTGGCCACTCCTCCTGTAGCCTGGGGGTGGGATGTGCCCTCCTGTTGGCAGCGTCATCCAACCCTCTCCACCCTCTGCCGAATCGAGCAGAAGCTTAAACCAGGTCAGCAGAGTGGGTTTGCTGGTTAATTGCATCCTGGCCTGTTCTCCCTGAGCTGTGCCCTGCCTGTGTCTTTTTCACTACAGGGGCTCCCAAGTGACTTTGGATACTGCCCAGGAGGGCAAGATCAGAGACCAAGCCCACTCAGCTCACTCTCAGGAGAGGGTGGTGGGCACCACAGTGAGACACCCCGACACAGGTGCAGAGGGCAGTTGTCACCAGATTATCAACAGACCCCAGAGTCTGTTGGTGAAAGTAGAAGGCATTACTAGCTGTAGGGCTCACCAAGGGCTTCCCTGGTGACTCAGTGGTAAAGAATCTGTCTGCCAATGCAAGAGATGTGGGTCCAATCCCTGGGTGGAGAAGATCCCTTGGAGAAGGAAATGGCAACCCACTCCAGTATCCTTGCCTGGGAAATCCCATGGACAGAGAGGAGCCTGGAGGGCTACAGTCCATGGGGTCACAAATGAGGCAGACATGACTTAGTGACTAAACAACAAGAAAGACTCAGCAAGCAAGATATAGCAATGCAATATCAGCAACGAAGGTAGCTAATGTGTAGTATTTATCCCTACAAAGAGAGCAGTCATGGTCAAATGGTTGATGAGGCCCTGATAACACACTGTCCTTCCTAAAAAGTCCCAGGGAGGCTCTGTATTTGCAAGTGGCCAACCAGTAGGAGTGGCCCCCCCAAGACAGAGTCTCAAGCAAAGTCTGCTCAACTGAGTTCATCACAGCTGACCTCTCCCACTCAGCTCACTCAGACACTAGTGCAGAGTCTCCCCCAGTCATACAGCCAGGGGGCTCTTGAGCTGGCCACCACAGGGCCAGTGCGGACTACGTTTGGAGGAAGGTTAGTGGCCATGGAGCAGGTCCCAAGCACCTGTGGGCCTCGGCCTGCACTCTTGAGATTTATTGGTGTATTGGGTGGGCTCCATCCTGTCCTCTGTCACCCAAGACCACACCTAGGATCTGCAACCTCACAAGGAGGACCCAGGAACAGACAGGGTTACCGTGTGCCCACTTTGTAAGCAGGACCTCTGTGGAACGTGAGGCTTGTCCTTTCTGGAGTTCAGCAGAGGCCATCCTGCCTGGCTGGGGTGCCCCCCGCCCCTGCCCCACACGCTCTGTATGTTAACTATCCATCTAATCCCCATGGTAACCCAAAGAGATGGGGACAACAATTGCCTCTGTTCTATGAAACAAGTCTGCTCATTTCATATATCTGGGGAAACGATATCGAGGTTCTCGCCTGAGACCACACAGCTGGTCAGTAGCAGATATGGGCTTGAACGCAGGTAGTGGGTCTCCTAAGCACTCAGTCGTTGCTGCTCCGTCTGGCTTGGACACCCAGCCTGCGTTTGGCCTGGTGGTGCTGCATTGGGCTGCACAGTTCTTGCTCATGGGCCCTTGGTGGGGAGTGTGCTCTCTGTAGCAGTCCCAGCCAGCAGGAGCCAGCCCTAGACCTTGTCTGGTGCCTGGGTGAACATCAGGCATTGAGAACGGTTAGCCAAGGGCAGGGCCTTGACCCCGTAACACCCTGTTTTAG
Seq C2 exon
GAGAGCGTCGCGCCGCTGTTCGAGGTCCGCATGGAGCTGGAGGACGATGGGCTGGTCTTCAATCCATCTCTGGAGGTGGGTGGGGACCGAGGCTTCCTGGCGCTGATCGGGAGTCTGGTCACCGACATCTACAATGCAGCCAAGCTCATCCCCAGACTGGCCAAGGGCAGGATGCACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAATGCAGAACTCTTCAGAGCA
R:
TTATAGTGCATCCTGCCCTTGG
Band lengths:
326-2259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development