DreINT0058272 @ danRer10
Intron Retention
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:182848-183291:-
Coord C1 exon
chr12:183156-183291
Coord A exon
chr12:183045-183155
Coord C2 exon
chr12:182848-183044
Length
111 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CCCCTGATGTCTCGATACAGATG
3' ss Score
8.39
Exon sequences
Seq C1 exon
GAAAACTTACACCTTTTCAAAGCAGACCCGTCGTCTCCACAGTGGAAGATTTATGTGGATTATGTAGATGAAATGGTCATCGACGGCTTCTTCAATGCTATCGAGAGCACGCTCAAGTTCTTCATGGAAAATACAG
Seq A exon
GTGTGCTGCTATCTTATTTCTCATTCATCTTTAAGTTTAGTTATGAGGGTTTCTTCGGTGTGCAGAGTGATTGTCGAGCAGTAAAACAGATCCCCTGATGTCTCGATACAG
Seq C2 exon
ATGCAGATGCTGGATTAGAGCCGCTGTTTGAGGCTCAGCTGCGCCTGCAGGTTCCTGACCTGGTGTTTCAGCCATCGCTGGAGCTCAGATCCTCAGACAGCCTCCATGAGCTGGTGGAGGGTTTGCTCAGAGACGTCTTTAAGACCTCCACTCTGGTGCCACGTCTGGCCAAGCACAGCGGCTTCCCAGACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383:ENSDART00000161178:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAAAGCAGACCCGTCGTC
R:
CAAACCCTCCACCAGCTCATG
Band lengths:
247-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]