BtaINT0050786 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31018456-31022085:+
Coord C1 exon
chr19:31018456-31018591
Coord A exon
chr19:31018592-31021888
Coord C2 exon
chr19:31021889-31022085
Length
3297 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTT
5' ss Score
3.5
3' ss Seq
TTGTTTTCTTTGTATTTCAGAAG
3' ss Score
9.5
Exon sequences
Seq C1 exon
GAAAACCTGGGTCTTTTTTCAGCAGATTCAACTTCTGATATCTGGAAAACGTATGTTAACTACATTGATGATATGTTGCTGGATGGATTCTTTCTTGCCATTGAGTGTTCCCTCAAGTACCTCCTGGAAAATACTG
Seq A exon
GTATTTAGTGGCTTATGGATGTGGGTTATTACTGGGAAGATAACAGCCATAGCATCTGTTGAGTTACAGTGAAGTGCCATTGAGTGCTCGGTGACTTTTCCCAAAAGGTGTGAACACTTTGTGAAGTGTACACAGTAAAATAGAAAAGGCATTGTGTGTCTGTAATTGTTCAAAGGTAAAACACTTCTCCCTCTCCAAAACCCAGATGACAAACCAGGCTCTAACACAGTGAAACCCGTAGCCAGGGTGAAAACACAAAAGCCGATTTACTCTAGGGAACTCCCTGGAAGTCAGTAGCTAACACTTTGCACTTCCAGCGTTGGGGGGCATGGGCTTGATCCCTGGTTGGGGAACTGAGACCCACACACCTTATGGCATGGCCAAAATAAATAAATAAATTTCATGGTTTAAGCCAAATGTACTCTATCTCTGTGGCCTTTTGAGAACACAGGGAGTTTGTAGCAGCTGGCTTATGTAGAAGAAACAGATGTTTTTCTGTGTAAAAAAAAAGAGAGACAAGAAGCTGGGGATGAGATAGCTTTCAGAAGGGAAAGGTATATTAAGGAGGCAGCGGGCATTCTTTGAAGCTGTTAAAAGATAGCTAAGGGCTTCAAATTTATGGTTGATACACAGGGCCAAAGATTTTATAGTAAAGGCTAACCTTGGTTAGTAAATGATGGGATGGAAAGGGGAGAAGAGTTCAAAAATAAAGTTGAATTAAACCTTTCACATTCTGGTAGATTCTGACATGCTCAGCAAGACTGAAGGAAGAGGTGAGGATGAGGCTAGATGAGAGCTTAAGGCACTGAGTAGAACCCAAGTTAAATGCAGAGTTAGAATAGGTGGGCTGAGACCAGATCTGGATATCCAGCCCCTGTAAGAAGCTGATGATGCAGAGAGGAGCAAGGCCAGCGCTGGGGTAACTCCACCCTATGGTCCTGGTAGGCGAAGTGACTGAGGTCAGAGGCAAGGTCTCTGCTTTCACAGTATAAGGAGACACAGAAGCAGGAAATGGGCTCAGGCCTAGTCAACAAGGTGGGAGATCACCTTCTAGAACCTCGGGCAGTGAACACAGGTGCCGAGACTGGGGAGCTGGTTCCTAGGGACCAGTGCCAATGGTGCTCATCTTAGTGAACTGACCCAACCTCGTCTGATAGTGGAGCTCGGAGACTCGCCACTCAGCTCTCCTCTAGAAGTTCTAGGAAGATGCTGCAGCCACACTTGAGTGCAGGCACTGCACGGGGGACTTGCCCCGGCTCAGTGTCTGTCCAGCCTTCCGGATCTGGGCTGTCTGATGTGTCACGTGTCCTCCTCTCATGGGAAGGAGAGCCAGGGAGCAAGAGGGTGAGGACAGGGGATGGTAGCCAAAGTCATCTTCCCTCCGTGGAAGTAGGAGGAAGGGAACCCACGCCCTCCACAATGTATCGGCAGTTAAGGGGCAGGAGCTGGCCTTAGGAGCCACCTGAGGTATGGTTGAAATGAAAAGGCGCTGGTTATCAAGGGGAGGTGAAGGAGCCTGAAGAGAACGGCCTCTAAGAGGAAAGCCACCGTGACCCTTCACCATAGCCCAGCTGGACAACTTCAGTCACCTGGTCCACCTTACTGTCTCCACCTCTCACACTTGGCCAAACCAGTACCATTTCCATGGCTTGGTCTGGCTTCCCAGCCACCTCTCAGAATCCAGACCTTGCCTGAGTTAACTGCTACCCACTCCGTCTGGAAACATTCTTCCTCTTCTCAACTCTTAAAGAGATTCACTTGTGCCAAGGATGTGGAACCACCAGGCCATCCAGTTTGCACGGTAATTGTGTTGGTATTGCATCTGACATAGGGATTATGGTTTCCTGTGGAGTTTCCCAGGTGGTGCTAGTGGTCAAGAACCCGCTTGCCAAGCAGGAGACGTAACAGATGCGAGTTCAATCCCTGGATCAGGAAGATCCCCTGGAGGAGGGCGTGGCAACCCACTCCGGTATTCTTGCCTGGAGAATCCCGTAGACAGAGCAGCCTGGTGGGCTACAGTTCATAGGGTGACAAAGAGATACAGCTGAAGCGACTCAGCACACACAGGCCTCGCCTTCTGCAAAGGTCCAAACTCTGTGGACTGTATTTCTCTCTAAATAGATCTACTTCTTGAGAAGAGGGAGGCTCATGAGGGAGGGGAGATATAATTATATATAATTTATATATATATATATAATTATGACTGATTTGTGTTGTTGTACGGCAGAAGCCAACACAGCATTGTAAAATGATTATCCTCCAATTAAAAAATTAAAGAAATAAATCCACTTCTTACCTAAAATATATATGTATAAGAAAATAAGTGGTTATTAATAAGAGTCTAAGCATTTATCTTGTAATTGGAACATCTTATTCCATATTATATTTTGATTTAAATTTAGCAAGGCAGTTTAGTCTAGCAAGTAATCAGGAATTTGTTAATTATTTATACTGTTTTTAAAAATTTTATCACTACAGGACTACAGAATTAAAACAAGTCCTATTTTTACAGAAAAGGAGCAGATGGGGAGGGATTGTGACTGCCCTTTTTTTCCAAGCCTACACGACCTTGGACAAGCACACCCTTGTTCCCCTAGTGGCTGCCGATGGAGTTGCCTGGTTTGTGCTCAGGATGATGTCCGCCGCTTCCAAGAAACTGGCTTTGCAAAACCAACACCTTCTCAACCAGAGGCCGTATTGCCCCACGGGAAGCTTTGAGAATGTGGAAGCGTTCTGACTTGGGTTGATCAGTCACAGGACGTGCTCTCTAAGGACAAGGAGAGTAAATGCCCTGCCATGCTCTGATGCCGGAGCTCCAGTATTTTAGCCACCTGATGTGAAGAGCCAACTCATTGGAAAAGACCTTGATGTGGGAAAGATCGAGAGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGTTGGATGGCATCGTCGACTCAGTGAACATGAATTTGAGCAAACTTCAGGAGACAGTAGAGGACAGGGGAGCCTGGGGTGCTGCAGTCCATGGGGTCACAGAGTGGGACATGACTGAGCAACTGAACAACAGCAGCAGTTCCAGGACAGCCACGCACAGGGAACTGGCCTTCAGAATGCCAGCGGTCAGTCCCCGTGTTGATCAACGCTGCAGGACTGCCACCTTCACCTTTTCTGGGGTTTTAGCAAAGTTTATATTTCTATTTGCTCAGACCGGAACAGCAGCTCTAAAGGAAAGAAACGCTCGGAGTGCTTTCAAATCAGTGTTGCATTTTTGCCACTTACCCACTGTCTCCTGTTTGTTTTCTTTGTATTTCAG
Seq C2 exon
AAGGTAAGGCAGGACTCACCCCGATATTTGAAGCCCAGCTGAGCTTAGCCATCCCAGAACTGGTTTTCCGTCCGTCACTGGAGCCTGGTGTGAAGGGCGGCTTCTACGACCTGTTGGAGGGTCTCGTCACCAGCATCTTCAGCATGGCGTCCTTGGTGCCCCGGCTTTCTCCTGAGAGTGGCTCTCCCCACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development