BtaINT0050398 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54403186-54404014:+
Coord C1 exon
chr19:54403186-54403329
Coord A exon
chr19:54403330-54403788
Coord C2 exon
chr19:54403789-54404014
Length
459 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CCCCGCCCCTGCCCCTCCAGGAG
3' ss Score
10.85
Exon sequences
Seq C1 exon
GGAGAACTGACCATCACAACCGACATGGAGGACCTGTCCACAGCCCTGTTCTATGACACCGTGCCCGACTCCTGGGTGGCCCGGGCCTACCCCTCCATGATGGGCCTGGCGGCCTGGTACGCCGACCTGCTGCTCCGCATCAGG
Seq A exon
GTAAGGACAGCCTTCCGGGGAGCCACTGCGCGCTCAGCAAACCCGTCCCCAGGGCCTGAAGAGCAAGGCTGGGGAGCGGGAATGTGCCGAGGTCCCCGCTGGCCCGGTCTTGCTCAGAGCAGGGCCGAAAGCGCCTGGGCCACACCTCAGGGAGACAGGCCTCAGAGTGCAGGCACTTCCCCTCGAAGGAAGCCCAGGGTGAGCTAGAGGTGTGAGCAGCTCCTGTGGCCAGAGATGCAGAGGCCCTCCCAGCAGGTCCAAGAGGCTCCAGAAACACCCGTTGGGGCGGCCACCTCATGGGGGTACCAGGGATGGGAGCAGCAGCCTTTCAGACTCGAGCCTCTGACACTGAGCGCCCCCCGCCCAGCGAGGGGAACCCGGGCAGGCGGCGGGGGCCCGCTGCCCACCGCGGTGTGGGGGCGGGGTGGCTCCAGCTCGGCCCCGCCCCTGCCCCTCCAG
Seq C2 exon
GAGCTCGAGGCCTGGACCACGGACTTCGCGCTGCCCACCACCGTGTGGCTGGCTGGCTTCTTCAACCCCCAGTCTTTCCTCACGGCCATCATGCAGTCCATGGCCAGGAAGAACGAGTGGCCGCTGGACAAGATGTGTCTGTCCGTGGAGGTGACCAAGAAGAACCGGGAGGACATGACTGCGCCCCCCCGGGAGGGCTCCTACGTCTACGGGCTCTTCATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:79
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCACAACCGACATGGAGG
R:
TGAAGAGCCCGTAGACGTAGG
Band lengths:
354-813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development