HsaINT0049587 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76421427-76422681:-
Coord C1 exon
chr17:76422538-76422681
Coord A exon
chr17:76421653-76422537
Coord C2 exon
chr17:76421427-76421652
Length
885 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CGGCTCGTGTGTCCTTGCAGGAA
3' ss Score
10.78
Exon sequences
Seq C1 exon
GGAGAACTGACCATCACGACCGACGTGGAAGATCTGTCCACGGCTCTCTTCTATGACACCGTGCCTGATACGTGGGTGGCCCGGGCCTACCCCTCCATGATGGGCCTGGCGGCCTGGTACGCAGACCTGCTGCTCCGCATCAGG
Seq A exon
GTAAGTGCCGTTTTCTCTGAGAGGCTTCCTAAGACTCGGGGACCGAGTGCCCAGAGCTCGGCACACCCCACACCCTAGAGCCTGCAGGAGCATGGCCAGGAGGCTCCTGGGGGCCTGTCCTCTGTCAGATCAGGGCCAGAAGGGCCTAGCCCATGCCCCTCCCACACCCTGACAGTGCAGCCATTTCCTCCCAAAGGAGGAAAACAAGCCAGGCCGCAGAGCAGCTTCCATCAGCTCCTCCTCAAGCGACCCTCAAAGGGTAAGCCGTCCTCTATAAGGAGCGAGGCAATGAAGGCAAGAGCCTCTTTGGGCTCCTAAATTATCCACAAACAGGAAGCCATTTTCTTCCTGACCCTTCTCTACCTGTTCCCTTGTTTAAAATGGAGCAAACAGCAGCTGGACACGGTGGTTCACACCTGTAATCCCAGCACTTTGGGAGACCAAGGCAGGCAGATCACTTGAAGCCAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCTAAAAATACAAAAATAAGCTGGGCATGGTGGCCTGCACCTGTAATCCCAGCTACTCTGGAAGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAGGTTGCGTTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCGATACTTCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAGACACCAAAGTTGCGTCATGGTAGGTGGCTGGGCTCCATGGCCCCTACTCTGTCCAGCACTTCTAGCTCGCTGAGTGGCCCGTGGAAGGTTCTGGCGTGACCCCTGCTCAGAACGGCCAAGGCCCGGTCGTTCCCATGTCATTCTATGTCCTCTCCTCCTAGCGGCTCGTGTGTCCTTGCAG
Seq C2 exon
GAACTCGAGGCCTGGACGACAGACTTTGCCCTGCCCACCACCGTGTGGCTGGCCGGCTTCTTCAACCCCCAGTCGTTCCTCACGGCCATCATGCAGTCCATGGCCAGGAAGAACGAGTGGCCCCTGGACAAGATGTGTCTGTCTGTCGAGGTGACCAAGAAAAACCGAGAGGACATGACCGCTCCTCCGCGAGAGGGCTCCTACGTGTACGGACTCTTCATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:79
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGACCATCACGACCGAC
R:
AGAGTCCGTACACGTAGGAGC
Band lengths:
358-1243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)