BtaINT0050435 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28093460-28093924:+
Coord C1 exon
chr19:28093460-28093577
Coord A exon
chr19:28093578-28093787
Coord C2 exon
chr19:28093788-28093924
Length
210 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CTCCTCCACCTCCTACCAAGACG
3' ss Score
1.73
Exon sequences
Seq C1 exon
GAGTTCCCTTTGAACCCTAAGGCACTGTCCCTAGGGGAGCTGTATGGGGAATATGACCTCAACACAAATGAATGGACGGATGGCGTCCTGTCCAGTGTCATGAGGACGGCATGTGCAG
Seq A exon
GTACCCAAGGGGTCATGGGGTGGGGAGAGCAGATGCCTGAATTTCCTGAGGGGGTGGGCAGTGTGGGGGTAGAAAACTCAATTTGGGGGGAAAAATGCTTGGAAATGCAGAGATCCCAGGAAGCAACTGGTTGCGTCTCCAGGGAGATGAGCATGGAGGGAGGGTGAGGTAACAAAGGTGTGGTTTCCTTCTCCTCCACCTCCTACCAAG
Seq C2 exon
ACGAGAAACCAGATGAGAAGTGGATCCTTTTCGATGGCCCTGTGGACACTCTATGGATTGAGAGCATGAACTCCGTCATGGATGATAACAAAGTGCTGACCCTCATCAACGGAGAGCGCATCGCAATGCCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605:ENSBTAT00000006277:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(27.1=100)
A:
NA
C2:
PF077289=AAA_5=FE(31.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCTTTGAACCCTAAGGCA
R:
TGCTCAGGCATTGCGATG
Band lengths:
252-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development