GgaINT1011506 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10083524-10084093:+
Coord C1 exon
chr18:10083524-10083656
Coord A exon
chr18:10083657-10083965
Coord C2 exon
chr18:10083966-10084093
Length
309 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
ACGTGTCTCTGTATGGACAGGTC
3' ss Score
7.69
Exon sequences
Seq C1 exon
GTGCTGAGGTCACTCAACAAGACGTACCGCAACATGAAGCAGAAGCCAGTCACTGTGGACCTCGACCCGAAGGCTGTGACCTGTGATGAGCTTTTTGGGGTTATCCATCCATCTACACGGGAGTGGAAGGATG
Seq A exon
GTGAGAGGCCAAAGCTGGCAGGCACTGCTCCAGGAAAGGCGCTTACACTGGGTGGGACCAGGCTCATCCAACCCTTCTGCGAGGGGCTGACATGCAGGGAAGTGCTCTCATGAGATGCATCCTTGTGAACATCTTGTCCGTGGTGTGGTGGTAGCGATGGGAAGCCTTGGGGCTTTCTACTGGGGTGATGGGGAGAGGAGGGAGCACAGGTGTGTGCAGGGGAAGCACCAACCCAGCGTGTGCCCCAGCAAACCTGATCTGAGTGGGAAGAGCTGGGCAGGAAGAACCCACGTGTCTCTGTATGGACAG
Seq C2 exon
GTCTGTTTTCTTCAACGATGCGTGACCTGGCCAACATCACACACAAGGGGCCCAAGTGGATCATCCTCGATGGTGATATTGACCCCATGTGGATCGAGTCCCTGAACACGGTCATGGATGACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.1=100)
A:
NA
C2:
PF077289=AAA_5=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACTCAACAAGACGTACCG
R:
CATCCATGACCGTGTTCAGGG
Band lengths:
246-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]