MmuINT0050763 @ mm10
Intron Retention
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118079554-118080845:-
Coord C1 exon
chr11:118080713-118080845
Coord A exon
chr11:118079682-118080712
Coord C2 exon
chr11:118079554-118079681
Length
1031 bp
Sequences
Splice sites
5' ss Seq
ATGGTTGGT
5' ss Score
5.29
3' ss Seq
ACCAGCCTGTCTCCCTCCAGGCC
3' ss Score
11.4
Exon sequences
Seq C1 exon
GTCCTCAAATCCCTCAACAAGACCTACCAGAACCTGAAGAGGAAGCCCGTGGCGGTGGACCTGGACCCGAAGGCTGTCACCTGTGATGAGCTGTTTGGCATTATCAACCCGGCGACCAGGGAGTGGAAAGATG
Seq A exon
GTTGGTGCGGTGCGGTGGGGTGTGGAGCGTTACCTGCAGTGGGGCTCTGAGACCCCGCCACGTCCCTGAGCAGGCTCCCTGAGACCTGTGCGGGTTCTGGTCTGGTCCTGATCACTGCAAAAGGGCTGATGGAGCCCTTGCTGGTGCACTCAGAGCGCAGAACACCTGTACCACCAGGCAGGAAGAGGGAGCTGAGGCTGACCCAGAAGCCCAAGTAGAGGCCCCTCTCACCTCAAGAAGGGACCCCGAAGCTGAGCCCTGCTACACTGACAGCCTCCTGTAGAGCACTCCACAGGGAGTGAAGGGCGGGCCCCTGTCCACCGGTTCGGGGATAGAGGCTTCTTCTGGTTGAGGCTCCATTGGGTTTGCCTCATGAGAAAACTGAGAACTGGGCCAGGGAAAGAGGGGGCTGGGGTGTCGACCATGTAAGCACCTCCTGACTGGAAGCAAAGAGCAGGCCCCGCTCCCCTGCTCCCTGAGGGAGGTGGCACCCCGGCCCCTCTTTCTTTCTCTTTGTGCTTTTCCCACCCACCTCCTGTATACACATTTCTACACGGGTATCGCATCGTGTCTCTCCCCTCGTGGGAGGACAAGCTCCGAGAGGGTGATGGGGCTTTGGTCAAAGCTTTCCCCCCTCCCACTTTTCCGTGCTCGGTACAGGGAGAAAGCGTGGGGTGTGTGCGTGTGAGCGAGTGAGCGGGGTGTCAAGCATGGCCCTGTGACCCTCCACAGGAGGCTGCTGAACCTTGAAGAGCCTCTGAAGGGGCGGGGCGTTCAGTGGTGGGAAAGGGGTGGGGCTGAGGGGTCAGGAGGAGGCAAGAGCAGAGGCTAGCACAGGTACTGAGGAAGGGCAAGAAGCCCCCCACCCCCCCGATGTCCCTTTAAGGGCGGGACTTGCTACCTCTGAGAAACTGAGTGGGCCTAAGGTCAGGCCCACCTAGGCATGACAGAGTGACGGCCACAGAGTGCCTGGCCTGTTATGTAGACCCCTCAGATGGGGCCGTGAGTGTCACCAGCCTGTCTCCCTCCAG
Seq C2 exon
GCCTGTTCTCAACCATCATGCGGGACCTGGCCAACCTCACGCACGAGGGTCCCAAGTGGATTGTCCTGGACGGGGACATAGATCCCATGTGGATTGAGTCCCTTAACACAGTCATGGACGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987:ENSMUST00000132685:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.1=100)
A:
NA
C2:
PF077289=AAA_5=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAAATCCCTCAACAAGACCT
R:
TGTTGTCGTCCATGACTGTGT
Band lengths:
257-1288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types