GgaINT0127363 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1059769-1062315:+
Coord C1 exon
chr18:1059769-1059979
Coord A exon
chr18:1059980-1062187
Coord C2 exon
chr18:1062188-1062315
Length
2208 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TATTCATGTCATCTTCCCAGGGC
3' ss Score
8.08
Exon sequences
Seq C1 exon
GTGGTGCAACTGGAGGAGCTGCTGACAGTACGGCACTCTGTCTTTGTGGTGGGTAATGCAGGCACGGGCAAGTCGCAGGTGATGAGGTCTCTGAATAGGACTTACCAGATAATGAAGCGACGGCCTGTCTGGACAGACCTCAACCCCAAAGCAGTCACCAATGATGAGCTTTTTGGCATCATAAACCCAGCAACGAGAGAATGGAAGGACG
Seq A exon
GTAAGTGTATTTTCTGCCTGAATGCGTAGATAAAGAAGGGTTATTTTTTTTTATGAACTTCTTGGGCAACCCAGGAGGACTCTTTGTGTGCAGGTCTCAAAGCCTGGTGCTTGTCTGCTGCTCACACCCATGTGAGAGCTTGTGGTCAAAAGGATTCTTAGGATGTTTTAGCTATTTGATCTTCAGATGGGAAGTGTAACATAAGCCTGCTTTATGCCATTGCGCTGAGAATAAGTGTCACGTCCCTTCAGACCAGCAGTTATTAGTTCCTAAATGGGACAGATGAGCTGGAGTGGGCTGGACCAGTGACAAAAGAGATGTGGAGGGGCCCCAGCACACATGTGCCAGCCCTGAAAGTGATGCTTTTCCACCAAGTCGCTGCCTGATGTCTCTGATCTCTGCAGTACACCAGCACTTGCCAGTCTGTCAGTCCTCATCACTCCAGAGGAAAATAAGCCGTGTGTTTAAAACTAGCTGAAAGGTCACAGACAACTCTTGGTTGTGTTTAATGCAGACATGCAGTTTTGATTTACATTCGCAGCTGGTTTGGGAGAAAGGCATTGCCGTGAGTCATCCTCGGCCAGAATCTCATCAAAGATAAGGAGACAAACTGTCACCCACCTCCCCCTGCCCCTGCCATGGGCCCTTCCTGATCCCCTGCTTCGCTCCGATGTCAGGGTTCATTTCATTTAACTGTAATTAGGGACCCTAAATGAAAAGTGAGGGAGGGCAGTGCGGGACACAGGCAGAGCTGTGCAGGAGGCTGCAGCAGCTGATGGAGGGCCGCAGGTGGCACAGAGCAGCAGCACAGGGGATGTGGTAAAGGCATGCACTCTGTCTTGCCTGGCCTGCAACATTTCAAGGGAGCGTAGGTGATTCTGCCCTGAGATTTAAAGGCAAACGTTTTTTATGTCGGCCGTTCCTGAAAATTTTGTTTCTTTTGGCTGAATATCAGCAAGGAGATTTTTTCCCACAGTCCAACAAGAGGTGATGCTGTCATCCCATCACTGTTCGTTATCAAGGGCCTTTTCAGGCTGTATATGTTAGATGGTAGAAGGTCCCACGAGGGAGTCCTAAAAGTGTGCCTTATAAAATCAAGCTCCTTTTTTAAGGCCCATGACAGCTCTGTGGTGTGGATGCACAAGATTAGGAGAGAGGCACTTTTCTCCGTGCTGCTGTCACAGAGCATATGAGGAGAGCATTCATGCTCTGAGACAGTCGATATTTTAGATACTGGTGATCTTGGAGCTGATTCAGAGGCAGTTTGCATGGCATGTGTTCAACACGTGAGGGGCTGCATAGAGGCAGAGCCAGTGGAGTGCCCTTCTGTGACTTAGAATGAGATACCCACATCAGGTGAACTCTTCTGCGTTTGCTGTGTGGAAGCTTTGCTTTTAGTCATGTAATGCCACCATCCATTCCTGGTGTGGGTCACAAAGAAATAGCTTGTCCTGGAGAAAAGGAGTGTGTTTGTTAACAATTCATCAGGAGAGGCGCTGTGCTTTTCTTTCATGTTTGCTGGTGTTTTTTCATGGAGACCAGCATCTCCCTCGGTGTTCCCATGTGTAGAACAGAGCTGTGTTTCGTGGAGTTTCCATTTGCTCTGCAGTACTGCTGCTCTGTTCCCAGCCTCCTTGCTCTTCTTAGCATTCATTATTTACTCCCCTCGAGACACCGCATCCTCTCTGTCTCCTTGATTTTACTGACATTTTGTTCTGTCATTCAATGCCATCCCCTGCTTGTTCTCCCCTCAATCTCACTAAAGCCATGACCTGGTGTTCAATGCATGTTGATTTCCCTGAAATACTTAGAGCCACAAAAAAACAACAACAACAACAAAAAAGCATTTACAAGAAATTCCAAGGCAGATTGGAATGGTTTTCCCTTCATTGTGTAATCTGTGCTTTCTTTTGCTTCTTGACATCTCCTCTTCACTTTTCATACTCCTTATTCTCAGTGGGAATGAAGCTCCTGTGTAGGTCTGCAGTCATTTTCAAGTGATGCTGACTGATAACATAATGATTCCTTGGAAGCAGACTAGACCCATATTGTGATACAGAAGTATTTATTACTTAAAACATGTACAGGTGCACGGTGTTCTGAATGCTTAAGATGAAAGCATTAATTATGATAATTTTTAGCAAGATGCTAGAGAAAATAGAGCAGGTGGCAGATTTGTTCATCAGGATATTCATGTCATCTTCCCAG
Seq C2 exon
GGCTGTTTTCATCAATCATGAGAGAGCTGGCCAACATCACACACGATGGCCCCAAGTGGATGGTACTAGATGGAGATATTGATCCGATGTGGATTGAGTCTCTTAATACAGTGATGGATGATAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.3=81.7)
A:
NA
C2:
PF077289=AAA_5=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]