RnoINT0049258 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52548601-52553435:-
Coord C1 exon
chr10:52553225-52553435
Coord A exon
chr10:52548729-52553224
Coord C2 exon
chr10:52548601-52548728
Length
4496 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
CGTCTGTGATTACTTTTCAGGAC
3' ss Score
8.77
Exon sequences
Seq C1 exon
GTAGTCCAGCTGGAGGAACTGCTAGCCGTGAGGCACTCTGTGTTCATCGTGGGTGGTGCTGGTACTGGGAAGTCACAGGTACTGAAGTCTTTACACAAGACCTATCAGATCATGAGATGTCGCCCTGTGTGGACTGACCTTAACCCCAAAGCTGTCACAAATGACGAACTCTTTGGCATCATCAATCCAGCCACTCGAGAATGGAAGGACG
Seq A exon
GTAAGAACGAGATGCTCCAAGACAAAGTCTTTATCCATAGAGTTCTGGGCTGGCTCAAAAGTTGAGATGAGCTGCAGGGAAGAGGATGATGAGCTGGTTGTGGGGACCACCAAAGAAGATTAGAGCAGCATCAGAAAGGAAGGAGCCACTCAGCTGGGAGGAAAACCCTAGCTTTCCAAATGTCCCTCCCCTAAGAAATCTTCTAGCCCCTCTTGTAAAGGTCCTTAAAGTATCCCAGAGTGGCTGCATTGCCTCATATGGACTCAAGGGATATACAAGAAAGGGAAGTTTGTAGTTCATTCTCATAGAAGTAGCATCTGCCAGCAGCCCAGAGAAGGATCCTCCCTGCTATGGGCACTGCCCTGGCAGTGATAGAAAGTTGCCTGCTATGTAACAGTGTCTGGATCTAGTGCCTAGTGACACATGGGATAACCTCTCTATCCTAGCTTGTAGGCTAATTTTGTCCTCCATAGAAATGCAGAGGACTCCAAACACACAAACCCTGTGGTCTGGGTGAGGAGATATCAGCCTCTCCTAATGGTTCAATGTCTGACTTCATCAGAGCCAAACTGTCTGAATTTCTTTAATTTAGAAGTTTCAGCCAGAGGCCCAGAACAAGGAAAATTAATGAACTGATTCTCTGGGTTTTATTTCCCTGTTAGTGATGCTCTTCTTCTTGTTGCTATTACTGCTGTGCCTCTTGTGTTTTGCTTCCCTTTGCTACTCTGTATCAGTGTATAAGAGTTCATATATTCATATGTATACACATAACAGAAGCCCTAAAGACAACTCTGTTTATGATACATTATGTGTGTTGCTAATGCTGTCTCCTGTGATGTTTCTTTAGAATTTCATGCTGTAATTTATCGTGCATTTTTTTAAAGGAAATTATGTGTGTTTGACTCTTTTAGCAGCTGGGATTCCTGTTCATTTATAACTCTGTCTAATTTTCAGCTGCACATATAAGATCATAAATTTGGTCAATAAGGATTCTTTTACATTCATGTTTTTTTAACCCATCTGGAATTTATTTGGGGGCTTAGTAAGAGGCAATGTAGAAAAATCAGCTTTGCTTCCTTCCAGATGGGCAATTGATTCTGCCAGTACCATTTATTAAATAGACCATTCTTTCTATCCGAGCCTAAATGCCAGCTTGGTGTGTATTAAATCCCATGCACACTGAGCTCCTACTCCAGACTTCCCAGTCTGTCCACTCTCATCTTTTCCTGTTCCTAAACTAGTTTTATTCTGTGTCAGATGCAGTCATTTTGAGGCATATCTTACAGTCTGATGAGGCACATTGGCTCTCGTAATTCTTTTATAATTTTTGGGAATACTCTCAGACACTTGTTTTGTTCATATTAAATTTGAGCTTGATATGATAATTCAATGCTTTAAACTTTGCTGTAATTCTAATTAAAACTATATTTAATTTATATATTATGTTTGGAAAACTTGCAGAAACAATATAGTAATCAAGGTTCTATATTCAGTAAATAGCACAATTTTGAAGCAAATGGTATATAGATTTTTAGAGTTTTTTTAGAATTTGCTAAAATTGTAGGGTACTATTTTTCTATATCCCCCTTCCAAAATCATATGGTTCCAATAGAGAGAAAAGGAAGTGCACGCACAGAAGAATCTCAATATATCACTGTATCAAAATGATACACAGTTATTCAATTTTGTATTCCATAAATAGAAAACATTTCTTTCTTGCTATGTTCATGGAATAGTTGTAAAAAGTTTAGAATTCAGCTAATTTCACAGAAACGTATATTGAATTCCAAAGTTTCATGTTATAGGTTACATTCTCTGATAATGCAGCTGAATTATAATTGGCTAGCAAGAAAATAACTCCCAAACAATCTTCTACTTGAAAAATCAAGAAATGTTCTCTGTACCTGAATCACAACGATGATCAAGGTAAAACCCATCAAAGAACCAGTGAGTAGGATAATTCACACAGAATCCAGAGAATCTTTCCATCCTGCAGCTCTGAAGCCTATTAAACTCTATCAAGAAAATAAACTGGAAACAAAAGTTGTTATCGTCATGGAACAATTAAACTAAACCTGAGGGAAATGAAACTAATAAAGACAAAGTCTGAAATTAGTCAGAAGGAGACAAACCAACAAATAAAAACAAACATAGATAAAATTACCCTGAATGTTTTGTGCATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTGTAAAGATTAGTAAGTTTCTTGTGAGCCTTCTTGGCGGGAAAACAGTATATATTGTGTGTACATGTGTGTGTATGCATGTGTGAGGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAAGAGGCGGGGGACAGGCCTGGAGAAATAGCTTGGTTGTTAAAGTGCTTGACTTGTGAGCACCAAGACCAGAGCTCATAACCCATAAAGCCTTGCGGTGGCACATGCTTGTAACCCTAGTACTGCAGAAGGGGAGATTGCTCTGGGCTGCACTCGTCAGCTCCCCTAGCTTACTCAATAAGCTCCAGGCCTGTGAGGGACCTTGTCTCAAGGAAAATTAAATGAATAGCACCTGGGATGCACACCTGAAGCTATCCTGTGTTCTCCACACACATCTGCACATACATAACATTCTCAAAATTTATTTAGAAATTATTATAGAGCAGTAGAAATAAGATTTAAGAAGAGTGTTTAAGCGGATGACCTAATATCTGAAGTAGATAACCTTGAGCAAAATGTAAATTAGCAACAATGAGTCCATAACAAGTAAGGAGCTTGAGTAAATTAATGAAAATCAAAATGTACAGATAATAGAGAGGCAAAAACAAATAATTTTGAACCATAAAATGGTGGCTCAGCCATCATTTTGTGGACCCAGGATAATTTTGATACTGGCATTTAGGTAAAAATCGTGATCTTTTTGCTTCCCAGGCAAAAATTCTAAATCAAGTAACCATAAATAGAATCCAACAGTCTGAAAAGAGTTCTCGGAGTACAGGCCAGACAATTGTTTTTATAAAACAGTGACAAAATGCATTGACAAACTAAAAGAAATTAATTGGATTGATAAATAAATACCAAAAGTTCAGTAGCCACTTCTAGCAGGAAGTTCCAAGTGAAATGGGATCTGACAGGCTCCTCCCCCAATATGATATGCACTGTACTTAAAGCCCTCAGGAAAATCAGCCCTTCCTGATGTTTACATATAAGTCCTCTTCCCTAGGAAGGGCAGCATGTCAGGGAAGCCTCTCGTCATCATTATTGTTTAGACCTGCTCTGGTGGCTCAGAGACTGCAATGAGGCAGGGGAAAGAAGCCTATGATGTACAATGGAGAAAAAGAGAAAAAAAGTTTGAGTTCTTTAATTCTGCGACTTTACAGTAAGAAAAACCCGGGAGACATTATTAAAAAATGACTGATGTAGCTCAGGGGGGTTTGCAGCCCCATAGGAAGAACAACAATATCAACCAACCAGACACCCAGGGATTAAACCACCAACCAATGAGTACACATGGAGGGACCTGTGGATCCAGCCGCATATGTAGCAGAGGATGACCTTTTCCGGCATCACTGGGAGGAGAGGCCCTCGGTCCTGTGAAGGCTTGATGCCCCAGTATAGGGAAATGCCAGGGCAGGGAGGCAGGTGGGAGTGGGTAGGTGGGTGGGGGAGCATTCTCATAAAGGCAGGCTGGGGGCATGCGATCGGAGGATTCCTGAGGGAAAACCGCGAAGAGGGATAATATTTCAAGTGTAGATAAAGAAAATATCTAGTAAAAAATGAAAAATATTGGAACTAATAAGACAATTTACTAAATATAATTGAACATAAAATATATAAGATTCGGTAGCTTTTCTCTCTACTAGTAATAGCTAGCTAGCAAAAAGTGAAAACCCCAAAGGAGAAAATCTCATTCGAATTAATGGCAAACATATGATATCTTTAGGAATATCTTGGCCATTGAAATAGGTGTTTAAACTGTATAATTTTAGTATTGGCATAATTTTTTAGAAAGAGACCCTATTATTTAGTAGGAGAATTTAACATACAAATCAATCCTACCCAAATCAATGTATAGATCCCCAGGTACTGATAGTGAGAATGGCAGGACTTGGCTCCAAAAGTCCATCCTAAACCAGATTGGCTAAGGTCGTGATTACAAAGCTCAGAAACTTCACTTCAGAAACCGTGGTGTGATTCTCAGGTGATACAGTCACTTGCTGAAATGATTTGCTGGGTCCTTTGAAACCTAAAAATCTCAACTATCCAGAACGGCAGCTACTGTTCTGTCCTCACTTCTGTTCTGGTATCAGTCTGGTACACAGAACATATGCCTCGGGAGTGTGTGTCAGGTACCAGGGAGAGCAAGATGCAAAGCCGGGTCTGTCCTGTCTTGTCTGTTTGCACCTCAAAGAGTGTTGTAGCCAACGTGGGGAAGCCATGTTAAGAGAAAGAGGGTCAGTGCTGGAATGGAAAAGAAGCCGTCTGTGATTACTTTTCAG
Seq C2 exon
GACTGTTCTCTTCCATCATGAGAGAGCTTGCCAACATCTCCCATGATGGCCCCAAGTGGATCTTACTGGATGGTGATATAGACCCGATGTGGATCGAGTCTCTGAACACCGTCATGGATGATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.3=81.7)
A:
NA
C2:
PF077289=AAA_5=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]