BtaINT0050809 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31091444-31097549:+
Coord C1 exon
chr19:31091444-31091654
Coord A exon
chr19:31091655-31097421
Coord C2 exon
chr19:31097422-31097549
Length
5767 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
ACATCTGTGGTTCCTCTTAGGAC
3' ss Score
9.26
Exon sequences
Seq C1 exon
GTGGTCCAGCTGGAGGAGCTCTTGGCAGTGCGGCACTCCGTGTTCGTGGTGGGCAGTGCAGGAACTGGCAAGTCGCAGGTGCTGAGGTCCTTGCACAAGACCTACCAGATCATGAAACGCCGCCCTGTCTGGACCGACCTCAACCCCAAAGCGGTCACCAACGATGAGCTCTTTGGCATCATCAATCCAGCCACACGAGAATGGAAGGACG
Seq A exon
GTAAGGGCAGGATGCTTCTGTCTTAGCTACTTGGGCTGATGAGAAGGCAGTGGGGAGGGTGCGGAGGAGGGAAAGCCGAGCTGATCAGTTTGGGGTGGGAGGAGGTGAAAAGAATCAAAGAAACTGATTTTGGCTTGGAGAGGATCATCATCCATTGGGGTATTTTCTCTCCTTGGGGATTTTTCAGCTCATAGAGAGAATAAACCAGGCAGGCCTTCTCAGCTGCAGTTCCGTGATTGTGGACTGCAAGTCATGGGGTTCCCACATTGCCTGGCAGAGGGTGTGACATGGGTCAGGCAGGGAAGCCCACCTCTCATTCCCAAAGGAGCAGGCAGTCTAGCGTCCCACAGAGGGTACCTCCCTGTCAGTACCACCCCAGGAGTGATGGGGAGGCTGCTACAGAAGACTCATCTCAGGAGCATCCTGGGACCACAGGAAGATGTGTATAGGATGGGGCGTCCCAGGTGGCTCCGTGATAAAGAATCCGCCTGCACTGCAGGAGGCATGGGTTCAATTCTTGTGTCGGGAAAATCATCTGAAAAAGGAAATGGCAGCCCACTCCAGTATTCTCGCCTGGAGTGTCCCATGGACAGAGGAGCCTGGCCGGCTGCAGTCTATGGGGTTGCAAAGAGTGGGACAGGACTTAGCGACTGAGCACATATGCATGTGTGCAAGTGTATAGGATAATACAAACACTGCTCCCTTTTATATGAGATCTTGAACATCCATGGATTTTTAGTGTCTGCAAGAGTTCCTGGAGCCAAGGAGCTGGTCCCTTCTACAGTGATTCAGATTGTCCCAAACCCATGCTCACTTGGGGCTGACCCCAGTGTCGCCTTCTGAGAACTGAAAATTGTGACAGGTGTTGAAAGGGTATCCTGTCACTGGGAGAGAGCAAAAAAGAAAATGGAGAAAACTCTCCACAAACTGATCAGATCTCTTTCCAAAAGCAGTGTGGCTTCCTGAATGTGGTCATCTCAGGTCCCGCCTAACATCCCAGTGACTACATCAGGGTATACTGCCTGTTGTTGTTCACTGGCTCAGTTGTGTCCGACTCTTTGTAACCCCATGGACTATATAGCACACCAGGCTTCCTGTCCTTCACTATCTCCCAGAGTTTGCTCAAACTCTTGTCCATTGAGTCAATGATGCCATCCAACTGTCTCATCCTCTGTCGCCCCCTTCTCCTCCTGCTCTCAATCTTTCCCAGAATCAGGGTCTTTTCCAATGAGTCAGCTCTTTGCATCAGGTGACCAAAGTATTATAGCTTCAGCTTCAGCATCAGTCCTTCCAATGAGTATTCAGGGTTGATTTATTTTAGGATCGACTGGTTTTATCTCCTTGATGGCCAAAGGACTCTTAAGAGTCTTCTCCAGCACCACAATTCGAAAGCATCGAATCTTTGGCACTCAGCTTTCTTTATAGTCCAACTCTCACATCCATATTTAACTACTGGAAAGACCATAACTTTGACTATACAGACCTGTGTCAGCAAAGTGATATGCCTGGATTCCTCTAATTTAGGGTCTTCCATCAGAGGCCTTGAAAAATGGGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTAATTTTTATTTCACTATTAATGAGGCTTAGCATCTTTTCCTTCTTAGCGGTCTTAGTAATTGGCTCTTTTGTAATTTTATTCCTTCTTATTATATTCTTATCAGTGTGTAAGTTTTTTTTTAATACATCAAAGACATTAAACTTTTATCTGTTATATGCACCACTAATGGTTTTGATCTGTCTTCCATTTGTCTACAGATACTTCATGACATGTTAACCATGTACTTTATAAAAGGAAATTATGTCTGTCTAGTCTTTTTAGCATCTGGGATTCCTATTTAGTTTATGACTCTTTCTAATTTTAGAGCATAATATCATAAATTTGGACTTAAAGATTCTTTTCACATTAACATTTTTTACTCATCTGAAGTTTATTTTGGGGCTTATCTGGGCTTCCCAGGTGGCACAGTGGTAAAGAACCCACTTGCCAATGCAGGAGATGCAGGTTTGACCCCTGGGTCAGGAAGATCCCCTGGAATAGGAAATGGCAACCTACTCTAGTATTCTTGCCTGGAAAATCCCACAGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGCTGCACATAGTCAGACCCGAATGATCACAAAGTATGAGGTGAGGCAGAGAATCAGCCTTATTTCCTCCCAGATGGATAATTGACTGTGAAATCTCCATTTATTAAGTAAAGTATCCTTTATCTCTGAATCTAAATTCCAGCTTTTCACATGTGCAGTTTTCCTTTGGTATCCCTGGGATATTGGTTCCAGGAACTCCTGCAGACACTAAAATCCACAGATGCTCAAGATCTCATATAAAATGGAGTAGTATTTGCTTTATCCTATACATATTCCTCCTGTAAACTTTAAATTATCTCTAGACTATTTATAACACCTGACACAATGTAAATGCTGTGTAAATAGTTGCAAAAACAATGTAAATGCTGTGTAAATAGTTGCTGCTGCTGCTAAGTCGCTTCAGTCATGTCCGACTCTGTGCGACCCCATGGACTGCAGCCTACCAGGCTTCTCCGTCCCTGGGATTCTCCAGGTAAGAACACTGGAGTGGGTTGCCATTACTATTGTTGCTAGAATATGCATGTTGCTAGACTATGCTAGAAATAGTTGCTAGAGTATGGCAAATTCAAGTTTTGGTTTGGGGAAATTTCTAGAATTGTTTTTTTTTTTCCCCGAATATTTTCAATCTATGGCTGGTTGAATGCACAGACTTGAAATTCGCATATTGAAAGGGAAAATTGTATTGACATCTGATTCTGGGTTTTCTATTCTGTTCCATCACCTATATCTAATCCTGTACTAATGTCATTCTATCTTAATTATTATCATTTTCTATCATTTTCCTGTCTGATGAGGTAAATCCCTCTTTAATACTTTTCTGTAATTTCTTTGCTAGTCTTAGATACTTCTTCCACCTTAAATTTAAGCTCACATAATATAATTCAAATTTTAAAATGTGAGAATTTTAAAGTTTTATTAAATATACTCATTAAATATGGAGAAATATACAAAAGTTTATAATAATCATAAATCTATGTTCCCTAAACAAGAGATCTTCCAAGTAAATGGAATATAACTTTTCAAAAATTTTAAGAATTTGATAAAAATAGAAATACAGTGGTTTATATTAATACTTGGAGAAGGCAACCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGGGGAGCCTGGTAGGTTGCAGTCAATGGGGTCACCAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCAATCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGCAGAGCCTGGTGGGCTGCTGTCTATAGGGTCGCACAGAGTCAGACACGATTGAAGCAACTTAGCAGCAGCAGCAGCAGCATATTAATACACATTTTTCAATATTAGAAAGATTCAATAGACAGAAAAATAAGTATAGGCAAAAAAGAATTAGGAAATGCATCATCAAACACAATGTAACACAAAGATATAGAACTTTGCATCTTGTAAATAGAAAATATTCCTTTCTTGATAGGTTCGTGGAACATTTCCAAAAATTTAAAGTTTAGCTGGGCACAGAAGAAATTGTAATAAATTCAAAAGTATCCATTTTTCAGGCCACTTTGTTGGATACTAATATAATAGAATTAGAAACAAATAGCAAGAAAATGACCAAAAATAATTTTATTACTTGCAGTCAAGAAATACCGAGCTCCTATATTAATGGGAAAATTTAATTGTAATCCTTCTTGGAAGCAAAATAAAGAATGTTTATACAGAGACCTCTGGGACACATCTAAAGCCAATAATGAAAATTTCTAAACTCTCATTATTACAGAAGATAGGCCAGAAAAAAAGGAAATCAGTATCCATTTTAATAAATTATTCAAAAAGTAATAAACTAAACCTGAAGAAAGATGGGAAGAAACTAATGCAAATAAAAGCTGAAATTAGTGGGAAGGAACAAAAAAGTATAGGAAGGATAAATATAAATATCGGTTCTTTGTAAAGACCGATAAGTCCATTGTGAGCATGATTAATGGGGGTAAGAGAGAGTAAAAGTACACAAGATAAGGAGTTAGAAAGAAGATATAACAGTAGATACAGACAAGATTAAAAGAGACACAATTAGATCATACATATTTGAAAAACTGAAATAGATGATTCCCTAACCAAATATAATTTTAACAAAATTTACTCAGTGAGAAGTAGAAAAAGTAAACTAACGAAATGAAAAGTTTTTAAATAGTAGCTGAATTAAGAAAAGATAATTCCAAAATCATAAAAAGCACACCTCTTATTTCATTTTGTGAAGCCAAAACAATTTTGATACCAACTTTTGTGCAGAACCAAAAAGAATAGCCCAACTTCCATTAAAATTAAGAATAAACCAAAGAGATCTATTACCAACATTATTATTCTGTTTTGCCTGTGGAAGTCTAGAAAATGCAGTTAAAACAATAAAATGGAATCCGTGGTATAAACTGGAGGAAAAAGACAATTATTAGTTTGGTGATTGTACAGCTTTATATCTAGAAAATTCAAGACATTATTGAAAAATCACTAGAATCAGTAAGAAAAAGCATTAAAGATAACTCAGTATAAAGTGAAGTACACCAAATTTAGAAGCTTATCTCTGTACTAACAGTAGCCAACTAAAACTGAAAATACAGGGGAAAAAATTCCATTCACAATAACAATAAAAACAAATGCTTAGGAATACCTTTAGCCAAAGAGATACATTGAAAATGCTGTAAAAATTTATTAAGGAACATAAAACAATATTTGAACAAATGAAAAGACATACCATATTATTGACTGGGAAGGCTTAGTATTATAAAAAATCAATTCAATCCAAATTAAGATATAAATTTCATGTAATGCCAACTAAAATCACATCAGGCCTCCTCTCAAAGCCTGGGTTTGGCAAGATTTTCCGGGCCGCAGTTTCAAAGAATGAAACTTACCTAAGAAGGTTTCATGTAATTCCATCATGTCGCAGTTGCCTGTTGAAATGATTTGCTCAGTCCCTTGTCACTTTAAAACCTTGGACCATTTCCTTCTCCAGGGGATCTTCCTGACCCAGGGATTGAACCTGTGGCTCCTGCATTGACAGGTGGATTCTTTACCATTGAGCCACCAGGTAGAAGGGGATAAATATATGTAATTATAGTTGATTTGCATTGTAGTATGACAGAAACCAACACAACATTGTAAAGCAATTTTTCTCCAATTAAAAATGAAAAAGAAAACAAACTGGGACCATCAGGTTTTCTTCTAGTTTTGTTGATGTCATTGTTGCTTTTGCTGATGACATCTGTTGTTGTCATTCTCATAAAAATTCAGATTGGAGCACAGAAAGAGCAGAACCTTGGGCATGATCAGATTTTTGGTAGAGTAGGAGAAAAGCCCAGTTCTGACCTGAATTTCCCGTGTACACCTCCTTCTGAAGGTTGTAGCTGATAGGGAAAGTTTGTGTTAAGAGAAAGAAGATTGATGGTGACCTGGAAATGGAGACATCTGTGGTTCCTCTTAGGACTGTTGTCTTCTATCATGTTGAGACATCTGTGGTTCCTCTTAG
Seq C2 exon
GACTGTTCTCTTCTATCATGCGGGAGCTTGCCAACATCACCCATGATGGGCCCAAATGGATTTTACTGGATGGTGACATTGACCCGATGTGGATCGAGTCTCTGAACACTGTCATGGATGATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.3=81.7)
A:
NA
C2:
PF077289=AAA_5=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development