MmuINT0051227 @ mm10
Intron Retention
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66029334-66034033:-
Coord C1 exon
chr11:66033823-66034033
Coord A exon
chr11:66029462-66033822
Coord C2 exon
chr11:66029334-66029461
Length
4361 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CTGTCTGTGATTCCTTTCAGGAC
3' ss Score
11.94
Exon sequences
Seq C1 exon
GTGGTCCAGCTGGAGGAGCTGCTAGCTGTAAGGCACTCTGTGTTCGTGGTGGGCGGTGCTGGTACCGGGAAGTCACAGGTACTGAGGTCTTTACACAAGACCTATCAGATCATGAGACGTCGCCCTGTGTGGACTGACCTCAACCCCAAAGCTGTCACAAATGATGAACTCTTTGGCATCATCAATCCAGCCACTCGAGAATGGAAGGATG
Seq A exon
GTAAGAATGAGATACTCCTAGGCAAAGTCTTTTCTGTCTATAGAGTTCTAGTCGGGCTCAAAGGTCAAGAGGTGAACTGCAGAGAAGAGGATGCTGAGCTGGTTGTGGGGACCACCAAAGATGATTAGGGGAGCATCAAAAAGGAAGAAGCCACTTTGGGCTGGGAGGAGAACCCTGGCTTTCCAGATGTCCCTCCCCTAAGAACTCTTCTAGCCCCATCTTGTAAAGGTCCTTAAATTAACCCAGAGTGGCTGCATTGCCTCATATAGATTCAAGGGATATGCAAGAAAGGGAAGCTTGTGGCTCATTCTCAAAGAAGTGGTACCTGCCAGCATCCCAGAAAGGAACCCTCCCCACTACAGCCACTGCCCTGGTAGTGATAGAAAGATGCCTGCTGTGTCACAGTGTCTGAATCTAGTGCCTGGTGATAACCGCTCTATCCTAGAAGGGCTTGTAGTCTAATGTTGTCCTCCATAGAGATGCAGAGAATTCCAAACTCACAAACCCTGTGGTCTGGGTGAGGAGATATCACTCTCCCCTAATTGTTCAATGTCTGACTTCATCAGAGTCAAACTGTCTGAATTTCTTTAATTTAGGAGTTTTCGCCAAAGGCCCAGAACAAGGAAAGCTAATGAGCTGCTTCTCTGGGTTTTATTTCCCTGTTAGTGATGTTTTTCTTCTTGTTGCTATTACTGCTGTGCCTCTTGTGTTTTGTTTCCCTTTGCTACTCTGTATCGGTGTATAAGAGTTCACATATTCATATGTATACACATAACAGAAGCCCTAAAAACAACTCTGTTTATGATACATTATGTGTTTTGCTAATGCTGTCTCCTATCATGTTTCTATAGAACTTTATGCTGTAACTTATCATGCATTTTTTTAAAGGAAATTATGTGTGTTTCACTCTTTTAGCAGCTGGGATTCCTGTTCATTTATAACTCTGTCTAATTTTCAGCTGCACATATAAGATCATAAATTTGGTCAATAAGGATTCTTTTACATTCATGTTTTTTAACCCATCTGGAATTTATCTGGGGGCTTAGTAAGAGGCAATGTAGAAAAATCAGCTTTACTTCCTTCCAGATGGGCAATTGATTCTGCCAGTACCATTTATTAAAGAGGCCATTCTTTCTATCTGAGTCTAAATGCCAGCTTGGTGTATATTAAATCCTATGCACGCTGAGCTCCTCCTACTCCAGGCTCCCCAGTCTGTCCACTCTCAACTTTTCCTGTTCCTAAGCTAGTTTCATTCCATGTCAGATGCAGCCATTCTGAGGCATATTTTACAGTCTGATGAGGCAAACTGGCTCTCATAATTCTATTATAATTTTTGGAATGCTCTCAGACACTTGTTTATTTCGTATTAATTTTGAGCTTGATAAGTTAATTCAACACTTTAAACATTGCTGTAATGCCGATTAAAACTATATTTAATTTATACATTATGCTTGGAAAACTTGCAGAAACAATATTGTAATCAAGATTCTGTAATCAGTAAATAGGACAATTTCAAGGCAAATGGCATATAGCCCTTTAGAGTTTTTTTTTTTTTTTTAGAATTTGCTAAAAATATAGTGTGCTATTTTCTATACCCCTTTTCAAAATCCATAGAGAGAAAAGGAAGTGTACACACAGAAGAATCCTCAATATATCACTGAATTAAAAATGATACATAGTTTTCAACTTTGCATTCCATAAATAGAAAATATTTCTTTCTTGCTAGGTTCATGGAATAGTTTTAAAAGTTTAAAATTCAGCTAACTTCAGAGAAACATATTGAATTCCAAAGTCTCATGTTATAGGCCACATTCTCTGATAATGCAACTGAATTATAATTAACTAGCAAGAAAATAACCCCAAACGATCTCCTACTTGAAAATCAAGAAATAGGTTCTCTAACCATGAATCATGAAGGTGATCAAGGTGAGACCCATCAAAGAACCATTGAGTGCGACAGCTTACACAGAATCCAGAGGGTCTTTTGAATATTCAGCTCCAAAGCCTATTAAACTCTATCAAGAAAATAAACTGGGGGGAAAAAAGGAAATTGTTATCCCCGCTGAGCAATTAACCTAAACCTGAGGGAAATGAAACTAATGAAGATAAAATCTGAAATTATTCAGAAGGAAACAAATCAAACAATCAAAAACAAACAGATAAAATTACACTGAGTATTGCTTTTGGGGCTTTTTTAATATCAATAAGTTTCTTGCGAGCATTCTTGGTGGGGAAACAGTGTATATTGTATGTGCATGTGTGCATGTATATGCATGTGTGAGGTTGTGTGCTTGTGTGAGGGTGTGTGTATGTGTACACAAAGAGGCACGACAGGCCTAGGGAAATAGCTCAGTCTTTAAAAGTACTTGACTTGTGAATGCCAAGAGCCAAGCTCATAACCCACATTTTAAAGGCCTTGCAGTGTCACTTGCCTATAAATCTAGTGCTGCAGAAAAGGAGACTGCTCTGGGCCTCACTATCACCTAACCGTGCTTACTTAAGAAGCCCCAGGCCTGCTGGGCAGTGGTGGTACACGCCTTTAATCCCAGCACTTGGGAGGCAGGGACAAGCAGATTTCTGAGTTCAAAGCCAGCTTGGTCTACAAAGTGAGTTCCAGGACAATCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAACAACAAAACAACAACAACAACAAACAACAAACAAAACAACAACAACAAAAGAAGCTCCAGGTCTGTGAGGGGCCTTGTCTCAAGGAAAGCTAAAAGGATAGCACCTAAGAAGAAGACCCAAGGCTCTCCTGTGTTCTCCATACACATCTGCACATGTATGACATGCTCTAAGAATTTTAGAAACTATTATTAAGCAGTAGAAACAAGATTTAAGAAGAATGTTTTGGCAGATGACATAAGATCTGAGATAGATACTCCTGAGAAAGATGGAAATTAGCCACCATCGGCCCATAGCAAGTAAGGAGCTTGAGTAAATGAGTGGAGATTAACATGTACAGGTAGAAGAGAGGCAAGAACAAATAATTTTTGAACCATAAGATGACGGCTCAGAAATCATTTTGTGGATCCAGAATAAGTTCAATACCAGCTTTTATGTAGAACTAAAGGAAAAAAAATCATGATCTTATGGCTGTAGGTGTGAAAATTCTAAATCAAGTAACCATAAATAGAATCCAACAGTCTCAAAAGAGTTCTCGAGTACAGGCCAGACAATTGGTTTTATAAAACGGCGATGAAATGCACTGATAAAGTAAAAGAGAAATTAATTTGATTGATAGATACTAAAAGTTCCATAGCTGCTTCCATAGCAGAAAGTTCTAAGTGAAATGGGATCTGATGGACCCTTCCCCCAATATGGTACACACTGTACCTAAAGCCCTCAGGAAGAGCAGCCCTCCCTGATGACTATGCATATCCTCCTCCTTAGGGAGGGGAGCCAGTCAGGGGAGCCTCTTCTCATCATTATTCAGGCCTGCTCCAGCGGCTCAGAGACTGCGATGAGGCAGGGGAGAAGAAGCATATGGTGCAAACCCGAAAAATAAAAAGAGAAAAAGTTTGAGTTTTTTAATTCTGCAGCTTGACAGTAAGAAAAATCCAGAAGACATTATTGGGGGAAAAAAATCACTGGAATTAATAAGATAATTTATTAAACATAATTGAACATAAAATATGTAAACTTTGGTAGCTTTTCTCTCTACTAGCAATAGCTAGCAAAAAGTGAAAACCACAAAGAAAACCCCATTCAAATCAATGTCAAAAATATGAAATATTCAGGAATATTTTGGCCAATGCAATAGGTGTTTTAAACTATATCATTTTAGTATTGGTGCATAAGACAATATCTGAATTAATCTTTTAGAGAGAGACCCTATTATATAGTAGGAGAATTTACTATACAAATCAATCCTACCCAAACTAATGTATAGATCCCCAGGTAATGAGTGAGGTAGTGAGAGTGAAAGAAATTGTCTCCAAAAGCCCATCATGAACCCGATTTGCTAAGGCTGGGATTACAAAGCTCAGAAACTTCACCTCAAAAAACGTGGTGTAACTCTCGTGTGATGTGATCACTTGCTGAAATGACTTGCTGGGTCCTTTGGAACTTAAAACTCTGAACCATCAAGAAGGCCGCTACCGATCTGTCCTCACTGCCAAGCTGTCACTAGTCTGGTACACAGAAAACGTGCCTCGGGAATGGGGGTCAGGTACCAGGTAAAGCAAGATACAAAGCTGGGTCTGTCCTGTCTCGTCGGCTTGCACCTCCAGAGTGTAGTAGCCGATGCAAGGAAGCTGTGTTAAGAGAAGGAGGGTTGGTGCTGGAGTGGAAAAGCAGCTGTCTGTGATTCCTTTCAG
Seq C2 exon
GACTGTTCTCTTCCATCATGAGAGAGCTTGCCATCATCTCTCATGATGGGCCCAAGTGGATCTTACTGGATGGCGATATAGACCCGATGTGGATAGAGTCTCTGAACACAGTCATGGATGATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752:ENSMUST00000080665:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.3=81.7)
A:
NA
C2:
PF077289=AAA_5=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types