BtaINT0050357 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54361015-54362440:+
Coord C1 exon
chr19:54361015-54361147
Coord A exon
chr19:54361148-54362312
Coord C2 exon
chr19:54362313-54362440
Length
1165 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACA
5' ss Score
4.87
3' ss Seq
AGCAGCCCTGCCGCCCGCAGGCC
3' ss Score
8.03
Exon sequences
Seq C1 exon
GTACTCAGGTCTCTGAACAAGACCTACCAGAACCTGAAGAGGAAGCCGGTGGCCGTGGACCTGGACCCCAAGGCCGTCACCTGTGACGAACTCTTTGGCATCATCAACCCGGCGACCAGGGAGTGGAAAGATG
Seq A exon
GTAACAGAGCAGGACCCCCGCGGGACCAAGGGGACCAGGGGTCGGAGCCGGCGTCCTAGGCCTGGGTCCGCGGCCCGCCGATTTTGTTGTGGATGCTCAGCCGGGCTCCGTGCAGCGAACCCGTGGCCTGGCCCCCGAAGGAGACCCTCGGCAGGTCCAGCTGGGGCAGGGGCCTGCGCATACACACGGGGCATCCTGATGGCACTCACGGAGAGCAGGGAGATCACAGAGGGCAGCCGGCTCACCCCACCAGGTGGGGGAAGTGGGGAAGCCACGGACACGTGAGCATCAGCACAGCGGCCCCGAGCGGGGCCACCACACTGTGGTCCACGGAGCAGGGAGGGGCCCGGAAACACAGGCCGGAGCCTCGGGGGCTGGGAACGCTGCTTCCCTGGAGGAGGCCCTTGACGAGGTTTGTGCTTTATAAAAAGAACCCAGGACACTGGAGAAAGGACAAATGAGGGGCTGGAGGAGAGAGAGGGGCCCCAGGGGGAGGAAGGGGCTCTGGAGCGGATGGAAGGAGGGGTGCCTGCTTCCTGGGGGCTCCCCCACCCTACCTGAGCTTCCATCACCCCCTTCCCGGGCCGGGCTGGGGCTCTGCTCCAGTCTCCCCCCTGCAAGGGTCCTTTGCCCCTCACCCTGCTTTCTCATCGTGACACTGTATGTGTTTCTATGTGTGTATCTTGTGTTTCCCCCACCCCCCTCCACTGGAATGCAAGTTCTGTGGGGTGGGCAGGGGACTGTGGCTGTCCCCAAGCCCCCTGCTCTGAGTCTGAGACTTGAGGAGCACTCAGCAAACCTTTACTGACAGAAGGAAGAAAGGTGGGGAGTGAGGAGTGAGGGGGTGGGGTGCTGGTTGGGGTCGTGGCGCTCCACTTAGGGCTGTCGAATCTGAGGATGGACCAGACTTGCGGGGCGTGTTATGGGGCAGGGTCAGGGGTGGAGGCATCAAGGAGGGGGGCCTTGGGGTCAAGAGAAGGGCAGGAAGTGAGCCAGGTCCCCTCCCGTCCGAGCGTCCACTGTCCCTCTGGGGAAGGGCACTGGCCACCTTTGAGAGAGAGGGGGCAGGCTGGGTCTCGGCCCGGCGGGTGCCCGGGGTGCTGTCAGCGCCCCCACGGAGCGAGTGCTGCCCAGAGCCAGGCCTGAGCAGCCCTGCCGCCCGCAG
Seq C2 exon
GCCTCTTCTCCACCATCATGCGGGACCTGGCCAACATCACTCACGACGGCCCCAAGTGGATCGTGCTGGATGGAGACATAGACCCCATGTGGATCGAGTCCCTCAACACCGTCATGGACGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.1=100)
A:
NA
C2:
PF077289=AAA_5=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTCTGAACAAGACCTACCA
R:
GTCCATGACGGTGTTGAGGGA
Band lengths:
246-1411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development