HsaINT0049547 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76487525-76488847:-
Coord C1 exon
chr17:76488715-76488847
Coord A exon
chr17:76487653-76488714
Coord C2 exon
chr17:76487525-76487652
Length
1062 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACG
5' ss Score
6.05
3' ss Seq
ATACCACGCGCCTCCCCCAGGCC
3' ss Score
7.75
Exon sequences
Seq C1 exon
GTCCTCAAATCCCTCAACAAGACCTATCAGAACCTGAAGAGGAAGCCGGTCGCCGTGGACCTGGACCCCAAGGCCGTCACCTGCGACGAGCTCTTTGGCATCATCAACCCAGTGACCAGGGAATGGAAAGATG
Seq A exon
GTAACGAGGGTGGTCCCGGGACAGGCTGCAGGGGCACTCCTGGTCCAGTGCAGTGAGCGTGTGCTCAGCCGTTCCCACGTGGAAGGCCAGCCTCCCCAGGCTAGGGTGGGGCACACAGGCACGTGGCCTGCAATGGTGGCACCATGGTAACAAAGTTTATGGGGAGCAGTGGGCACGTAGCACCCGGGCTGGGGGATAAGGAATGGGGGCCACAGGAGCTGGGACGGTGAGGACTGCAGGCCTGCCCCGAGCAGGCCAAGGGGAGAGGGCAGAGCAAGGACAGGTGTGACCCGTGAGGAGTGCATGGGAGCCCAGACATGCAGGCTGGAGGCTGCCCGGGGAGCCCTGGCCTCAGTCGGTGGGCTCTGGGGAGAAGCTTCCCCCAGGAGGTGGCGTCACTGGGTTTGCACTTTATGAAAGGAACTCCGGACGTTGGAGAGTGGGCTGCAGAAAGGAGCTGCGAGAGCTGAGGAGGAGTCAGCGGGAGCAGGGTGGTCCTGACCAGGAGCCTAGGGGAGGGCTGTGCCTAGCCTGTCCCCCGCACCCTACCCATCAGAAGTGGCCCTACCCCTGACCCGCTTTCCCTGTCCCCCTTCGCTGGCTTCTGCATGTACAGCTCACTTCCCCTACTAGAAGTCAAGCTCTGTACCCCCAGCCCCCACCTTGCTCCATTCCATGCCTGACGCATGAAGCGTGCTCCGCAGACTTCTGCTGAGCGTGTGAGTGGACAGATGGACAGAGCTGGGTGCACAGGTGCTGCGCCCCGTGGGATGTTGAGCCTGGAAAAACTGAGCCAGCCAGGGCCACAAAGAGGGGCTGACAGGGAGGGTGCAGGGTCGGAGGAGGACAGGCAGGGCCTCAGGCATGGAGAGGGCACGTAGGAGGGAGGCCACAGAGAACGGAGGGCAGGGAGCCTGGGCACCTCATGCCCGAGGGCCTCTGCTGTTCCTCTGAAGTAGGGGACAGGCTCCCTCCCAGAGAGAGAGGCCAGGGTCAGGACTGGTGGGGACTGGAATGGGGCCGGAGTGAAGGGCCCGGGGTCATACCACGCGCCTCCCCCAG
Seq C2 exon
GCCTGTTCTCCACCATCATGCGAGACCTGGCCAACATCACCCATGACGGCCCCAAGTGGATCATCCTTGACGGAGACATAGACCCCATGTGGATCGAGTCTCTCAACACAGTCATGGATGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:42
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.1=100)
A:
NA
C2:
PF077289=AAA_5=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCAAATCCCTCAACAAGACC
R:
TCATCCATGACTGTGTTGAGAGAC
Band lengths:
254-1316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)