BtaINT0050440 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28097381-28097945:+
Coord C1 exon
chr19:28097381-28097472
Coord A exon
chr19:28097473-28097746
Coord C2 exon
chr19:28097747-28097945
Length
274 bp
Sequences
Splice sites
5' ss Seq
AAAGTCAGA
5' ss Score
-2.27
3' ss Seq
GTCCCTTTCCCCATCCCCAGCTC
3' ss Score
9.06
Exon sequences
Seq C1 exon
GACACAGTGTACGAGTATTTCGTGGACCCAAAGATCCGGAGCTGGACATCGTTTGAGGATAAGCTCCCTAAGAGTTGGCGCTACCCTCCAAA
Seq A exon
GTCAGAACCGGGCCTGGGGGGTGGGTCAGGCTTAGGATTGCGGTGGGGGGAGATGTGGCGAGAGAGTTGAGATGACTTTCCAGGACAGGAAGCAGAAGCTAGAGGAAATGGGACAGGGTCCCTGAAGAGAATGCCGGATCCCCAGGCTCCACAGGAGGTAGGGTGGGTGATCAGAGAGCAGTGATGCCGGAGGAAGAGTGGGGAGCAGAAGGAAGCAGGAGTTAGAAAAGAGTGGGCCATGATCTTGAGACACAGTCCCTTTCCCCATCCCCAG
Seq C2 exon
CTCCCCCTTCTATAAGATCGTGGTGCCCACCGTCGACACTGTCCGCTACAACTACCTGGTGAGCACCATGGTGGCCAGCCAGAACCCCGTCCTGCTGGTGGGTCCTGTGGGGACTGGAAAGACCTCCATTGCCCAGAGTGTCCTGCAGTCCTTGCCCTCCAGCCAGTGGTCAGTGCTCACAGTCAACATGTCTGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605:ENSBTAT00000006277:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(1.8=16.1)
A:
NA
C2:
PF127752=AAA_7=FE(24.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTCGTGGACCCAAAGATCCG
R:
CTGCGCAGACATGTTGACTGT
Band lengths:
276-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development