DreINT0009233 @ danRer10
Intron Retention
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21261217-21262089:+
Coord C1 exon
chr7:21261217-21261308
Coord A exon
chr7:21261309-21261890
Coord C2 exon
chr7:21261891-21262089
Length
582 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
TATCACGTGTCTCTGTGCAGTGC
3' ss Score
8.81
Exon sequences
Seq C1 exon
GACACCATCTACGAGTACTACGTGGACACCAAGAACAAAACGTGGGCGTCATTTGAGGACAAGCTGCCCAAGGGCTGGCGCTACGCCTCCAA
Seq A exon
GTGAGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCCCTTCCTCCTATTCAGGGGTCTCTGCCAGCCGCCTGCGGGTTCAGTCAAAGGCCTCTTGCCTGGCTCCCTCCCAGACTTCTGAATTCCCCGTCTATTCATATTTCTCATCTTTTTCATCCTCCTTGGTTTCTCTCTTCTCTCCCCTGCTCTCATTTGTCATGTCAGTCCGGCTCTTTCCCCTTCATTGTCCTTTGTCCTCTTGGCTCTCTTTGCTCCCTCTTTGTCAGCTGTCCATTTTCTCATCCCGAGGTTCTCCTTTTTTCCCCCTTACCTGAGTCTTTTTTTATCCCTCTGTTCATTTGAAATGTCTTGCTACATCTTTCAATTTTCAGTCTTTCAATCAGCACTTTTCACCTCCTCTGTATTCTCATCCATTCAGCTCTCTCAACTCTATTCCCTCTCTCTCTCTCTCTCGCATGCTCCATATTCTGCCTTTTCTCTTCATTTATTGTCCTCTTTTTAAAAAGTGTCTCATACTTAGCCGTCCCACTTTTCAACTTTTCTTGCTGGCATCTTTTTAATTATCACGTGTCTCTGTGCAG
Seq C2 exon
TGCTCCGTTCTATAAGATCATGGTCCCCACTGTGGACACGGTGCGCTATCATTACCTGGTCAAGGCTCTGGTGTCCACTCAGCATCCAGTGCTCCTGACGGGTCCAGTGGGGACTGGGAAGACGTCAGTGGCCCAGAGTGTCCTGCAGAGCCTGGACAACATCACATGGGCCACGCTCACCGTCAACATGTCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352:ENSDART00000128014:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(1.8=16.1)
A:
NA
C2:
PF127752=AAA_7=FE(24.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCTACGAGTACTACGTGGA
R:
TGTGAGGACATGTTGACGGTG
Band lengths:
287-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]