RnoINT0048899 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56068007-56068524:-
Coord C1 exon
chr10:56068433-56068524
Coord A exon
chr10:56068206-56068432
Coord C2 exon
chr10:56068007-56068205
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
GTTGTCCCTTTCTTCCCTAGCGC
3' ss Score
10.6
Exon sequences
Seq C1 exon
GACACAGTGTATGAATACTATGTGAACCCCAAGATGCGGACTTGGTCGTCATTTGAGGAGCAGCTCCCCAAGAGCTGGCGTTATCCTCCCAA
Seq A exon
GTGAGAGCGGTGGGCTTGGTGGCAGAAGTGGTGGGAGTAGTGAGGCCAGAAGCCATGGTGAGCTAAAGAGGAGAAAGCAGATTCCAGGAAGAAATGATAAGGTTTAGGAAGTTGGATCTAGAGAACTCTGGACAGGGTCTTCAAGGAGAATGCCACACCCCCAGGACCCAGGAAGCTGGGTTGCTGACTGACGGTCCTTGAGACACGGTTGTCCCTTTCTTCCCTAG
Seq C2 exon
CGCCCCTTTCTATAAGATCATGGTACCTACTGTTGATACCGTCCGATATAACTACCTCGTGAGCACCTTGGTGGCCAACCAGAATCCTGTCTTACTGGTGGGTCCTGTGGGAACTGGAAAGACCTCCATAGCCCAGAGTGTTCTCCAGTCCTTGCCTTCCAGCCAGTGGTCAGTGCTTGTTGTCAACATGTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(1.8=16.1)
A:
NA
C2:
PF127752=AAA_7=FE(24.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTATGAATACTATGTGAACCCC
R:
TGCAGACATGTTGACAACAAGC
Band lengths:
284-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]