RnoEX0028524 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56068007-56068857:-
Coord C1 exon
chr10:56068705-56068857
Coord A exon
chr10:56068433-56068524
Coord C2 exon
chr10:56068007-56068205
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACTCACATACTTTTTCTTAGGAC
3' ss Score
6.89
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
GTGAACCCAGCTGATACTGAGAACCACGCCTTTATGGTGGAGATGACGTTTGTGTTCAGCATGATCTGGTCTGTGTGTGCCTCTGTGGATGAGGATGGACGCAAGAAGATTGACAGCTACCTTCGCGAAATCGAGGGCTCCTTTCCCAATAAG
Seq A exon
GACACAGTGTATGAATACTATGTGAACCCCAAGATGCGGACTTGGTCGTCATTTGAGGAGCAGCTCCCCAAGAGCTGGCGTTATCCTCCCAA
Seq C2 exon
CGCCCCTTTCTATAAGATCATGGTACCTACTGTTGATACCGTCCGATATAACTACCTCGTGAGCACCTTGGTGGCCAACCAGAATCCTGTCTTACTGGTGGGTCCTGTGGGAACTGGAAAGACCTCCATAGCCCAGAGTGTTCTCCAGTCCTTGCCTTCCAGCCAGTGGTCAGTGCTTGTTGTCAACATGTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(1.8=16.1)
C2:
PF127752=AAA_7=FE(24.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTACCTTCGCGAAATCG
R:
ACACTCTGGGCTATGGAGGTC
Band lengths:
182-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]