MmuEX6086669 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69271862-69272802:-
Coord C1 exon
chr11:69272650-69272802
Coord A exon
chr11:69272368-69272459
Coord C2 exon
chr11:69271862-69272060
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTACTTGTCTCTTAGGAC
3' ss Score
9.04
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
GTGAACCCAGCCGATGCCGAGAACTACTCCTTTATGGTGGAGATGACCTTTGTGTTCAGCATGATCTGGTCTGTGTGTGCCTCTGTGGACGAGGACGGACGCAAGAAGATTGACAGCTACCTTCGAGAAATCGAGGGCTCCTTTCCCAATAAG
Seq A exon
GACACAGTGTATGAATACTACGTGAACCCCAAGATGCGGACTTGGACGTCATTTGAGGAGAAGCTCCCCAAGAGCTGGCGTTATCCTCCCAA
Seq C2 exon
CGCCCCTTTCTATAAGATCATGGTACCTACTGTTGATACTGTGCGGTATAACTACTTAGTGAGCACCCTGGTGGCCAACCAGAATCCTGTCTTACTGGTGGGTCCTGTGGGAACTGGAAAGACCTCCATAGCCCAGAGTGTTCTCCAGTCCTTGCCCTCCAGCCAGTGGTCAGTGCTCGTCGTCAACATGTCCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'57-52,'57-51,58-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(11.1=57.7)
A:
PF127752=AAA_7=PU(1.8=16.1)
C2:
PF127752=AAA_7=FE(24.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGAAATCGAGGGCTCCTT
R:
ACACTCTGGGCTATGGAGGTC
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: