RnoINT0048898 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56068433-56068857:-
Coord C1 exon
chr10:56068705-56068857
Coord A exon
chr10:56068525-56068704
Coord C2 exon
chr10:56068433-56068524
Length
180 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
ACTCACATACTTTTTCTTAGGAC
3' ss Score
6.89
Exon sequences
Seq C1 exon
GTGAACCCAGCTGATACTGAGAACCACGCCTTTATGGTGGAGATGACGTTTGTGTTCAGCATGATCTGGTCTGTGTGTGCCTCTGTGGATGAGGATGGACGCAAGAAGATTGACAGCTACCTTCGCGAAATCGAGGGCTCCTTTCCCAATAAG
Seq A exon
GTCAGGGCCCTTACAGCTCACCGCCCTTTACATCCTGTTTCTGCCTTCAGACTCTGCCTGACCTAACATCCTGACCTAACATCTTGCTGCCACACTCTTTTCGTCAGTCTGTGAGCCCCGCCTCCAGCTGGGAAGAGCTGGAGGAACGTCTGGGGACACGACTCACATACTTTTTCTTAG
Seq C2 exon
GACACAGTGTATGAATACTATGTGAACCCCAAGATGCGGACTTGGTCGTCATTTGAGGAGCAGCTCCCCAAGAGCTGGCGTTATCCTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(1.8=16.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCCAGCTGATACTGAGA
R:
GGAGGATAACGCCAGCTCTTG
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]