MmuINT0050845 @ mm10
Intron Retention
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69458866-69459300:-
Coord C1 exon
chr11:69459148-69459300
Coord A exon
chr11:69458958-69459147
Coord C2 exon
chr11:69458866-69458957
Length
190 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
CTTGTGTACTTGTCTCTTAGGAC
3' ss Score
9.04
Exon sequences
Seq C1 exon
GTGAACCCAGCCGATGCCGAGAACTACTCCTTTATGGTGGAGATGACCTTTGTGTTCAGCATGATCTGGTCTGTGTGTGCCTCTGTGGACGAGGACGGACGCAAGAAGATTGACAGCTACCTTCGAGAAATCGAGGGCTCCTTTCCCAATAAG
Seq A exon
GTCAGGGCCCTTCCAGCCAGCTGCCCTGTATGTCTTGTCAGGACCTACAGGGCACCCCTCTGGCCCTCAGACTCCGCCTGACCTAGCGCCTTGGTGCCACCCTCATTGCCCGTCAGTCTGTGAGACTCAGCTCCAACTGGGAAGAGCTGGAGGGACGTCTGGTGACCCAACTTGTGTACTTGTCTCTTAG
Seq C2 exon
GACACAGTGTATGAATACTACGTGAACCCCAAGATGCGGACTTGGACGTCATTTGAGGAGAAGCTCCCCAAGAGCTGGCGTTATCCTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237:ENSMUST00000035539:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(1.8=16.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCCAGCCGATGCC
R:
GGAGGATAACGCCAGCTCTTG
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types