DreINT0009232 @ danRer10
Intron Retention
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21260461-21261308:+
Coord C1 exon
chr7:21260461-21260613
Coord A exon
chr7:21260614-21261216
Coord C2 exon
chr7:21261217-21261308
Length
603 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CACCTTGTATTAAACCTCAGGAC
3' ss Score
6.67
Exon sequences
Seq C1 exon
GTGAAACCAGCTGACTCTGAAAACTATGGTCGGATGGTGGAGCTCTGGTTCATCTTCAGTCTCATATGGTCAGTATGTGCTTCAGTAGACGAGGAAGGACGAAAGAAGATTGACACCTTCCTACGGGAAATTGAGGGAAGTTTTCCTAACAAG
Seq A exon
GTAAACGATGACCCAAAAGCTGAAGTGTCATTTTTGTGCCATTATTGTAGTTAAATCGAACATAGCAAAATAACATACAAACCATACATACATACATACAAACAAAACACCGTTTACCTTTATCAAATTTTGACTAACATTTAAAGAAAATGCTATTTTGTGTTATTATTGCTATTATTATTCAGTATATTTCTGATTAAAAGATATTTTTAATGTATCTATCTATATTAAAATAGTTTTGATTTGCATTGCCAATGATTTATTGGAACAATTGATCATACTTTGGTAATTACTTTATGTAATTAATTAATTTTTATTTTCTTATTTGTTGCTGGAGTTGCTGTATATACCAGTAGGTTTCCTTTGTATTGTTTTCGTATTTAAAAAAAAGAAAAGCTTAAATAAAATCTAACAAAATAGTTTTGAGTTGACTGTAGTCTGCATAAAGCAGGAATAGACATAATAAATGCAAATCTATGCATACTCATGCTAATGTTACATGAAAAGTGTTGATGCTCTGCGTCTACAACAAACGTTTAAGACGTTCTGCCTACAGAAACAAATATATTACTGTAGAAATAATCACCTTGTATTAAACCTCAG
Seq C2 exon
GACACCATCTACGAGTACTACGTGGACACCAAGAACAAAACGTGGGCGTCATTTGAGGACAAGCTGCCCAAGGGCTGGCGCTACGCCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352:ENSDART00000128014:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(1.8=16.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAACCAGCTGACTCTGAA
R:
CAGCCCTTGGGCAGCTTG
Band lengths:
230-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]