BtaINT0050477 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28132222-28132683:+
Coord C1 exon
chr19:28132222-28132450
Coord A exon
chr19:28132451-28132531
Coord C2 exon
chr19:28132532-28132683
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CAACACTCCTGCTTCGGCAGGTC
3' ss Score
5.58
Exon sequences
Seq C1 exon
GTTGTCAGTGTTGGAGACCTATTTTATCCCCAAGGATGGGAGCCTGGCCTCGTACAAAGAGTACATCAGCATGTTGCCTGGCATGGACCCCCCAGAGGCTTTTGGCCAGCACCCCAATGCCGATGTGGCCTCCCAGATCACAGAGGCACGCACTCTGTTTGAGACTCTGCTTTCCCTGCAACCCCAGATTACACCCACCAGGGCCGGAGGCCAGAGTCGGGAGGAGAAG
Seq A exon
GTAAGGACAGACAGACAGTCACCTGGGGGAGGGAAACCAAGGAGGAAGAGAGGTCTACACTCAACACTCCTGCTTCGGCAG
Seq C2 exon
GTCCTTGAATTGGCTGCCGATGTGAAACAGAAGATCCCGGAAATGATCGACTATGAGGGGACCCGAAAACTACTGGCTATGGACCCCTCCCCACTCAATGTGGTCCTTTTGCAGGAGATTCAGAGATACAACAAGCTGATGGAGACCATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605:ENSBTAT00000006277:79
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGCACTCTGTTTGAGACT
R:
GGAGGGGTCCATAGCCAGTAG
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development