DreINT0009271 @ danRer10
Intron Retention
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21341546-21342023:+
Coord C1 exon
chr7:21341546-21341780
Coord A exon
chr7:21341781-21341871
Coord C2 exon
chr7:21341872-21342023
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTCT
5' ss Score
2.57
3' ss Seq
GACTGTGTGTGTGTGTTTAGGTG
3' ss Score
10
Exon sequences
Seq C1 exon
GGTCTCCTCCTTGGTCTCCTACTATGTTCCTCGTGATGGATCTCAATCCTCATATGTGGACTACATCAGTCAGCTGCCTGCACTAGAGCACCCAGAACTTTTCGGACAGAACCCTAATGCTGACATTGCCAGCCAGATCACGGAGGCTCGAACCCTGTTCCACACATTGCTGTCTCTCCAGCCGCAGGTCACCAGCACAGACACCACCAGCGCTGGAGCCAGCAGAGAAGACAAG
Seq A exon
GTGTCTTTAAAACAAATATTGGGTTTACTGTTCTTATAATTGCATTTCACAAATCTTGTGTAGGCATTTTTGACTGTGTGTGTGTGTTTAG
Seq C2 exon
GTGCTGGAACTTTCTGCTGATGTTCTGCAAAAGATCCCTGCTGAGATTGACTATGAAGGCACTAGGAAGTTGCTAAAGGATGATCTTTCACCTCTGAATGTGGTTTTGCTGCAGGAGATCCAGAGATACAACACACTGCTGCACACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352:ENSDART00000128014:81
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.0=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCAGCAGAGAAGACAAG
R:
GGTGTGCAGCAGTGTGTTGTA
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]