RnoINT0048937 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56030963-56031419:-
Coord C1 exon
chr10:56031191-56031419
Coord A exon
chr10:56031115-56031190
Coord C2 exon
chr10:56030963-56031114
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CAGAGCTTCTGCCTCCTTAGGTC
3' ss Score
6.56
Exon sequences
Seq C1 exon
GTTGTCTGTGCTGGACACTTACTACATCCCGAAGGACGGGAGCTTGGCATCTTACAAAGAATACATCAGCTTGCTGCCTAGTATGGACCCCCCTGAGGCCTTTGGCCAACACCCCAATGCTGACGTGGCCTCCCAGATCACTGAGGCCCGGACCCTCTTTGAGACCCTGCTTTCCCTGCAACCCCAAATTACACCCACCAGGATTGGTGGCCAGAGCAGAGAAGAGAAG
Seq A exon
GTAGGAAGAGAGGATGTCCTAGGGAGAGGGCCTGCTGAGGAAGGGCAGCCTAGCCCCAGAGCTTCTGCCTCCTTAG
Seq C2 exon
GTCCTAGAGTTGGCTGCGGATGTAAAGCAGAAGATCCCTGAGATGATTGACTATGAGGGGACCCGGAAGCTGCTGGCTCTCGACCCCTCCCCACTCAACGTGGTCCTCCTACAGGAGATCCAGAGATATAACAAGCTCATGAAGACCATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:82
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACCCCAAATTACACCCA
R:
CCTGTAGGAGGACCACGTTGA
Band lengths:
168-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]