BtaINT0050497 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19112119-19117844:-
Coord C1 exon
chr25:19117753-19117844
Coord A exon
chr25:19112234-19117752
Coord C2 exon
chr25:19112119-19112233
Length
5519 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TCACTCTGTCTCCTCTTTAGACT
3' ss Score
9.64
Exon sequences
Seq C1 exon
ATCAGTGAGATTGTCGGCTATGAAATAAAGCCCACTGAAACGACTTGTCTCTCAAATATGCTGGAATTTGGATTTGGCAAATTCATTGAAAA
Seq A exon
GTAAGATGTCTCCTTTCAGAAAGTTTTTTGGTCAAGGTATCTGTAATTTCCTATAGTTGTGTGACTGGCTGTATAGCAAGCTACATTTCTCATTCTGGTTTAGGAGAACCTCTATTTCAGCTGACTAGCAGCTGGTGAAGCTTTCATCTCCAGCTGTGGAGTTTCTGTTTTTTGTTTAATATTTATTTATTTGGCTGCATCAGCTCTTAGTTGCAGGATCTTTGATTTTCGTTGTGGCATGTGGGATCTTTAGTTGCAGCATGCACACTCTTAGTTGAAGCGTGTGGGATCTAGTTCCCTGACCAGACATTGAACCCAGCCCCTTGCATTGGGAGTGCAGAGTCTTAGCCACTGGGCCACCTAGGGAAGTCCCTCCAGTTGCAGAGTTGATGTCAGATTACGACTAGAAAATTGAGTTAGAGATTCTATTTCAAAAATAAAAATTTTTAAAGAGTTCTTTGAACCTGAGCTCCAAGTCCAGCTAGACTTTGAGCAAGACCATAGAACTTCTCTGGGCCTCAGTTTCCTCCTTGTTAAACAACAGCAACAAACAGAAGGGGCTCTCTGAGCTAAATAAAATATGGTCAAATGAGAAATCTCTTCACTTGCTTTCTCTCCTTCTCCAAATGCCCCTAGAGTTTGCATGTGAGAATTTGTACTATTGAAACTGCTGTTTTTATGACCAGAGATTCTCAGAACCCTGTTTGTTTTTCCATACTTCCTTCAGGGTGATGGGTGGGGAGATGTGTTCCTGAGACTAAAGACCCCGTTAGGCAACTGGGTTTGGGCTCACTCAACACACATGATTCTCAGATTGTGATCCCAGTCCAGCTACATCAGCATCACCAGCGAACTTGTTAGAAATGCACATTCTCAGGCGCCACCCCAATTTGTTCAATCAGAAATTCAAGGGGTGAGCACTGCAATCTGTGTTTTAACAAATACTCCAGGTCAGTGCTGTGCAGTACAGGAGCAGCTTGCTACATGTGGCCTCTCAGCCTTTAAATGTAGCTATTCTGAATTTGCTGTGCTGAGTGTGTAAATAAAGGCTGGCCTTCAAAGATTTATTAAGGAAAAAAAAAGCAAAATACCTATTTTAAATAGTGATTATGTGTTGAAATTATAATATTTTATTGTTGTTGTTGTTCAGTCGCTCAATCATGTCTGACTCTTTGCGACCCCATGGACTGCAGCATGCCAGGCTTCCCTGTCCTCCACTGTCTCCTAGAGTTTGCTCAAACCCATGTCCATTGAGTCAGTGATGCCATCCAACTATCTCATCCTCTGTCACCTACTTCTTTTCTTGCCTTCAGTCTTTCCCAGCATCAGGGTCTTTTCCAATGAATCAGCTCTTTGCATCAGGTAGCCAAAGTATTGGAGCTACAGCTTTAGTATCAATCCTTCTAATGAATCTTCAGGACTGATTTCCTACTGGTTGGATCTCCTTGCTGTCCAAGGGACTCTCCAGAGTCTTCTCCAGCACCACAACTCACAAGCATCAATTCTTTAATGCTCAGCCTTTTGTATGGTCCAACTCTCATATCCATACAGGACTACTGGAAAAATCATAGCTTTGACTAGATGGACCTTTGTCAGCAAAGTAATGTCTCTGCTTTTTAAATCACTGTCTAGGTTCATCATAGCTTTTCTTCCAAGGAGCAAATGTCTCTTAATTTCATGGGTACAGTCACCATCTGCAGTGATTTTGGAGCCCATGAAAATAAAGTCCTGTTACTGTTTCGATTGTTTCCCCATCTATTTGCGATGAAGTGATGGGATCGGATGCCATGATCTTCGTTTCCTGAATGTTGAGCTTTAAGGCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGGGGCTTTTTAGTTCTTCTTCACTTTCTGCCATAAGGGTGGTATCATCTGCGTGTCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAACTTGTGCTTCTTCCAGCGCAGTGTTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACATACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAGGTTTCTCAAGATGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTATATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTTGATGATCCAGCGGATGTTGGCAATTTGATTTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCTGGAAGTTCACAGTTCACGTATTACTGAAGCCTGGCATGGAGAATTTTGAGCATTACTTTACTAGCGTGTGAGATGAGTGCAGTTGTGTGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGGGATTGGACACATGCATTTTTACCAAGTTTATGTAATTTTATTAAAGGGCCTCATTTTCCCCAGTAAGATGTTCCGAAGAAATAGCAGCTCTAGAATAATTATGCTGCACTGAGTATTTTGTATGTATTGGCCAACTTATCCATCACAACAACCTAATATTCTAGGTAATTTTAGTCACATTTTACAGATGAGAAAATAAATTGATTAGAGAAATTAAGTAACTATCCAGAGGTTGCAAGAACCAAGACCTGAGCCCAGGCTAGCTGACTTCAGAGCCTTAATTGTTACTCTTTACTGCCTTGAAAGATAAACCCACCTTTGGAGACAGAGCGTGAGTAAGTACACAGCATCCTGCCACACTTCTCACCACCGGGCTCAGTTGTGACAGATCCAGAAGTGGTAATGCCTTGGCCAAGTTGTTAACCTCTGTGTGCCCAGTCTCCTTATCTGTAAAATAGAAATAATAATAGTAACCAGGTGATCAAGAGTTATTGTGAGGATTATGAGATAAGGCATGTAACCTGAACTGACTTAATTTTTAAGTTCTCAGCTACCACCTATTAGTGAGGTATGGTGCCCTCTATAGCTCACTCTCTGTAGTTAAGGTAGTTTTATCACAGCCCACAGTTAGTTAGGGGGCTTCCCTGGTGGCTCAGACAGTAAAAGAATCTGCAATGCTGGAGACCCAGATTTGCTCTCTGAGTCAGGAAGATCTCCTGGAGAAGAGAATGCTACCCACTCGAGTATTCTTGCCTGGAGAAATCCATGAACAGAGACGCCTGGCAGGCTACAGTCCATGGGGTCACAAAGAGTCAGACATGACTGAGTGACTAACAGTGCATTTGGATAAGGTCAATTTAATATACTTCATGGACTCCCAACCTTAGTAATCCCCTCCTGCAATTATCTGCATAATCATAAGTCATAAGGCACATTTCCAAGCATTTTGTCTTATTTAATTATACCAAAACCTTTGATATGGGCAAATGGGAACTGAAGGCCTGTCAAGTGACTTAGTCACAGCCACACATCCAGCCTATTTGTTTCATACTCATCTGGGTTGACACCTGCTTTTATTATTCTCTTTATGCTCACTCAATTTAGTTGTCTCCTGAGAAGGTCACATTTAGGATGGTGACCATGCTGCTGATGTGTTCATCTGGCATTATCCATGCCTCTTCTACTTCCCACCGTGAGGCTAAATTTGGGTTTTCAGCTCAACTCAGTTGCCCTGTTTGGCTGACCACATGTGAGTGATTCTATTGCTCCTCTGATAGGGCAGAAAGCACATAGTTGGGGAGAAAGAAACGCTGGATTAGGAGTCAGAGGAACTGGTATCTAGACCTGGTTCTGGCCCTCTGCAGCTGTATATGTGGCTCTGGACATGTCACTTGCTTCCTCTGGGCTTCAGTTTGCTAAAATGTATGTAAAGATCAGATGGATACAATGAAAGAGAGTGCTGAGGCAGACAGAATAATCCTTCCTTTTCCCTTCAAGAACTCTGCTTCCCAGTTCTTCAGCCACACCTGGATTTGGCTCTCCTGCAGAAAGAAGAAGAAAGGAATTTATCTTCTCCTTCTCTCACTATGTCTCTCTTTCTATGGAACCTCTAGAGGGGCTGTTCCATGGATAGGCCAATGCATCAGGAAAATATCAGATATGTTTTTTAAAAGTATGGACAGAAAGTGGAGAAAAAGCCATCATATAAATTAACAGAAGTTCTAAGATCTGAATAAGAAGTCAATAATAAATCAAACCTGCGTCTCTTAAGCCTCCTGCACTGGCAGGCAGGTTCTTTACCACTCATATCACCTGGGAAGCCCACTAATTCTGAAGTAAATAGGAATAAGGAGTAAATGAAAATGGAAAAAAGATCTTGTTTTAATGCTTAAAATAGTGGTTCTCAACTGGGGATGTCCACCCCCAGGGGATACTTTGCAACACCTGGAGACATTTTTGGTTGGTGCAACTGGCAAGGGATGAGGACTAGGGGAGTCAGCTACTGGCATCTAGTGGGTTGAGGCCAAGGATGCTACTAAACATCCCGCAGTGCGCAGAACAGCCGCTCGCAACAAAGAATTATCTCCCTGTATTAGTTTTCTAGTGCTGCTGTAACAAATACCATAATCCGATTGGCTTAAACAACACAAATTTACTTTCTCACAATTGTAGGTTTGAAGTCTAAGGTCAAAGGGGTTTTTCTTGGGGGTGGGGGCAGGGGATAGGGACTGAGGGCTGGGATTTGGTTTCTTCTAAGGCCTCTCTCCTTGACTTGCAAATGACTGCCTGCTCCTGTGTCCTCCTATGGTCTTCCCTCTATGTATGTATCTTAATCTCCTCTTCCAATAAAGATTCCAGTCATTGGTCCAGTGGCTAACACTTTGCACTCCCAATGCAAGAGGCCCAGGTTCAATCCATGGTTGGAGAACTATGATCCCACATGCCACAACTAAAGACCCGGCACAGCTAAATAAATAAATACTTTTTTTTTTTTTTTAATGATACCAGTCATATGACCTCATTTTAATTTAACTACATCTTCAAAGACTTATTTGGGCTTCCCAAATAAGTGGTAAAGAACCTACCTGCCAATGCAGGAGACATAAGAGACATGGGTTCAATCCCTGGGTAAGGAAGATTTCCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTAGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTGCAGTCCATAGGGTCACACAGAGTCAGACACAACTGAAGTGACTTAGCACGCAAAGAACTATTCATGTCCAAACAGAATAACTCACATTATGAGGCACTGGAGGTTAAGACTTCAATATGATTTTTGGAGAGATACAATTCAGCCTTTAATATAGCCCCAAAAGTCCATAGTGCCAAGGGTAAAGAAACCCTGCAAAACATTGGAGATACTGGTAAATATTAGAGTAGGATGGTAAACTTTTTGTAAAATTAAAGGCTTTTTAAATTTCTCTAATGGCTGAGCTGAAATTCCTCCTTTGATGTATTTTTGATGCCTCCTCTGTTGATGTTACTATCACTCTGTCTCCTCTTTAG
Seq C2 exon
ACTGGAGCCCATCGGTGCAGCTGCCAGTAAGGAATACTCTCTGGAGAAAAACTTGGAGAAAATGAAGTTAGACTGGGTTAACATGACGTTCAACTTTGTGAAGTACAGGGACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560:ENSBTAT00000024702:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(7.3=100)
A:
NA
C2:
PF083938=DHC_N2=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]