GgaINT0013837 @ galGal3
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15742146-15742647:-
Coord C1 exon
chr14:15742556-15742647
Coord A exon
chr14:15742261-15742555
Coord C2 exon
chr14:15742146-15742260
Length
295 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
3' ss Seq
TATGTTTTGTTTCAACTTAGGCT
3' ss Score
8.58
Exon sequences
Seq C1 exon
ATTAGTGAAGTTGTAGGATGTGAAGTCAGACTGAACGAAACTACTACCCTTCTAAACATGCTGGAATTGGGACTCTCAAAATACATTGATCA
Seq A exon
GTAAGAAGCTTACTCTCCTTTTTCTTATTTTAACAAAGCCCGATGGAACTGTCAGATGTCTTTGTGGAACCACGACAACAGAAAATGGTTATGTTCCCATAGCACTTAATTTCTGCATTCAGAATTTTGTCTGTAGTAGTATCTAAATTAATACTGATTTCTCTACCTGGTGAGCTTGGAAGCGCATAAATATTCCCTGAGATAAGAATCTATGTTACTACTGAGAAATCCATATAAAAGTTAGCAGCTCTTCAGTTGCAAAAGCATTTCAAAGTTATGTTTTGTTTCAACTTAG
Seq C2 exon
GCTGGAACCCATCGGAGCAGCTGCAAGTAAGGAGTATTCTTTAGAGAAGTCAATAGAGAAAATGAAATTAGAGTGGGTCAGCGTGCAGTTCAGTCTGGTGAAATACAGAGATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(7.2=100)
A:
NA
C2:
PF083938=DHC_N2=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAGTTGTAGGATGTGAAGTCA
R:
AGTATCTCTGTATTTCACCAGACTGA
Band lengths:
204-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]